View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11635_low_51 (Length: 337)
Name: NF11635_low_51
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 48167433 - 48167739
Alignment:
| Q |
15 |
cacagacatttaaagttgtcaatatttccaacaaacatattacctgacaatggtatgtttttgtgagcttccataggtagatgtttttacgacacagcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48167433 |
cacagacatttaaagttgtcaatatttccaacaaacatattacccgacaatggtatgtttttgggagcttccataggaagatgtttttacgacacagcaa |
48167532 |
T |
|
| Q |
115 |
aaatataaatcttctgcacgaacttgtattttcgatacggttcttaaaatttgggtttggtatttcagcaacagtatcttatttgtgctcaagtatgcat |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
48167533 |
aaatataaatcttctgcacaaacttgtattttcgatacggttcttaaaatttgggtttggtatttcagcaacagtatcttatttgcgct-aagtatgcat |
48167631 |
T |
|
| Q |
215 |
gactatagaattacattccgactattaagtcaacttgtgttnnnnnnncataggaaaggggaaaattttatcaattaaacttgtgttagcga--ataata |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48167632 |
gactatagaattacattccgactattaagtcaacttgtgttaaaaaaacataggaaaggggaaaattttatcaattaaacttgtgttagcgaatataata |
48167731 |
T |
|
| Q |
313 |
gtataaac |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
48167732 |
gtataaac |
48167739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 17496546 - 17496498
Alignment:
| Q |
198 |
tgtgctcaagtatgcatgactatagaattacattccgactattaagtca |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
17496546 |
tgtgttcaagtatgcatgactatagaattaaattctaactcttaagtca |
17496498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University