View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_low_52 (Length: 320)

Name: NF11635_low_52
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_low_52
NF11635_low_52
[»] chr7 (4 HSPs)
chr7 (1-304)||(1446116-1446419)
chr7 (36-305)||(1459554-1459823)
chr7 (42-139)||(12104995-12105092)
chr7 (255-291)||(12104846-12104882)
[»] chr2 (6 HSPs)
chr2 (41-119)||(974971-975049)
chr2 (41-119)||(409787-409865)
chr2 (36-82)||(1399319-1399365)
chr2 (36-82)||(1403014-1403060)
chr2 (60-97)||(404574-404611)
chr2 (254-290)||(820724-820760)
[»] chr6 (1 HSPs)
chr6 (36-88)||(10117272-10117324)
[»] chr5 (1 HSPs)
chr5 (41-128)||(36198844-36198931)
[»] chr3 (2 HSPs)
chr3 (245-291)||(45810950-45810996)
chr3 (49-137)||(45810754-45810842)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 1446116 - 1446419
Alignment:
Q  1 tgagtcaaattatggaatgtaggagagttaaaagtcttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1446116 tgagtcaaattatggaatgtaggagagttaaaagtcttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattac 1446215  T
Q  101 attcaataatatctgctctaatcaactttgttaaggtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatatagttgaagatcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1446216 attcaataatatctgctctaatcaactttgttaaggtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatatagttgaagatcttc 1446315  T
Q  201 aataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggtaatattatggga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1446316 aataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggtaatattatggga 1446415  T
Q  301 taat 304  Q
    ||||    
T  1446416 taat 1446419  T

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Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 305
Target Start/End: Original strand, 1459554 - 1459823
Alignment:
Q  36 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaag 135  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||  |||||| ||||| |||||||||||||||| ||||||||||||||    
T  1459554 cttggatagttttatgtgtagaaactccacatttgaaagtgctttcatccgaaccccgcaatcacattgaataatatctgctctattcaactttgttaag 1459653  T
Q  136 gtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatatagttgaagatcttcaataactggacaataccctagaagacacttaagat 235  Q
    ||||  |  |||  ||||| |   |||| || || ||||||||||| |||||||||||||||||||| |||||||||   | |||||||||| | |||||    
T  1459654 gttttgcggcatgcgttggaaaagagaagagagacataggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagat 1459753  T
Q  236 ctccatatcgatcaaacttaatgtctttcaaatgtagggttttgagtgaaggtaatattatgggataatt 305  Q
    |||||||| | | ||||| ||||||||||| |||||||||||||||||| |||||| ||||| |||||||    
T  1459754 ctccatattgttgaaactcaatgtctttcagatgtagggttttgagtgagggtaatcttatgagataatt 1459823  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 12105092 - 12104995
Alignment:
Q  42 tagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaaggttt 139  Q
    ||||||||| |||||||||||| | || |||| || || |||||||| || | ||| ||| || ||||||||||||||  ||||||||||||||||||    
T  12105092 tagttttatccgtagaaactccgcgttcgaaactgtttccatcggaatatagaaatcacaatccataatatctgctcttttcaactttgttaaggttt 12104995  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 12104882 - 12104846
Alignment:
Q  255 aatgtctttcaaatgtagggttttgagtgaaggtaat 291  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  12104882 aatgtatttcaaatgtagggttttgagtgagggtaat 12104846  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 974971 - 975049
Alignment:
Q  41 atagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctct 119  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||| | ||| ||| |||||||||||||    
T  974971 atagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagcattcacagtcagtaatatctgctct 975049  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 409865 - 409787
Alignment:
Q  41 atagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctct 119  Q
    |||||| ||| ||||||||||||| ||||||||| | ||||||||||| |  ||||| ||| || ||||||||||||||    
T  409865 atagttgtatacgtagaaactccaaatttgaaagcgatttcatcggaaaaatgcaatgacaatcgataatatctgctct 409787  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 1399365 - 1399319
Alignment:
Q  36 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 82  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1399365 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1399319  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 1403060 - 1403014
Alignment:
Q  36 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 82  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1403060 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1403014  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 404611 - 404574
Alignment:
Q  60 ctccacatttgaaagtgctttcatcggaacatcgcaat 97  Q
    ||||||||||||||||||||||||||||| || |||||    
T  404611 ctccacatttgaaagtgctttcatcggaaaatagcaat 404574  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 820760 - 820724
Alignment:
Q  254 taatgtctttcaaatgtagggttttgagtgaaggtaa 290  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  820760 taatgtctttcaaatgtagtgttttgagtgagggtaa 820724  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 10117272 - 10117324
Alignment:
Q  36 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaa 88  Q
    |||| |||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  10117272 cttgaatagttgtatgcctagaaactccaaatttgaaagtgctttcatcggaa 10117324  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 36198931 - 36198844
Alignment:
Q  41 atagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactt 128  Q
    |||||| ||| | ||||||||||  |||  ||||||||||||| |||| ||| ||||||   ||||||||||||||||||||||||||    
T  36198931 atagttgtattcttagaaactccgaattaaaaagtgctttcattggaatatcacaattaacgtcaataatatctgctctaatcaactt 36198844  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 45810950 - 45810996
Alignment:
Q  245 gatcaaacttaatgtctttcaaatgtagggttttgagtgaaggtaat 291  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||    
T  45810950 gatcaaagttaatatttttcaaatgtagggttttgagtgaaggtaat 45810996  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 45810754 - 45810842
Alignment:
Q  49 atgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaaggt 137  Q
    ||||| |||||||||| ||| ||||||||||||||||||| || ||||| |||   | ||||||| |||||  ||||||| ||||||||    
T  45810754 atgcggagaaactccaaattcgaaagtgctttcatcggaaaatagcaataacagatagtaatatcagctctcttcaacttagttaaggt 45810842  T

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