View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_53 (Length: 319)
Name: NF11635_low_53
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_53 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 7081553 - 7081862
Alignment:
| Q |
10 |
tgagatgaagattttgaaggcatgatggaagcttttctgaagcaaagatttgaagggatagtgttttctaagtaagaaacttcttcattgaaggaagtgt |
109 |
Q |
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| T |
7081553 |
tgagatgaagattttgaaggcatgatggaagcttttctgaagcaaagatttgaagggatagtgttttctaagtaagaaacttcttcattgaaggaagtgt |
7081652 |
T |
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| Q |
110 |
gagggaaaggttgtgaatttgggaagatgaagctacctcttgtgtaagaaactgaggagagtgtaaagttaaggtgagtgtttgcaaagtagattaaggg |
209 |
Q |
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| T |
7081653 |
gagggaaaggttgtgaatttgggaagatgaagctacctcttgtgtaagaaactgaggagagtgtaaagttaaggtgagtgtttgcaaagtagattaaggg |
7081752 |
T |
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| Q |
210 |
aatgatggatttgagaagttgtgtagttccacaagttttgattatgatctttgttggatatacaaagagacttgattctgataaaacataggcatcaaag |
309 |
Q |
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| T |
7081753 |
aatgatggatttgagaagttgtgtagttccacaagttttgattatgatctttgttggatatacaaagagacttgattctgataaaacataggcatcaaag |
7081852 |
T |
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| Q |
310 |
taagagtttc |
319 |
Q |
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| T |
7081853 |
taagagtttc |
7081862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 49020237 - 49019942
Alignment:
| Q |
19 |
gattttgaaggcatgatggaagcttttctgaagcaaagatttgaagggatagtgttttctaagtaagaaacttcttcattgaaggaagtgtgagggaaag |
118 |
Q |
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| T |
49020237 |
gatttagagggcatgatggaagcttttctatggcaaagatttgaagggatagtgtcttctaaataggttacttcgtcattgaagcttgtgtaagggaaag |
49020138 |
T |
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| Q |
119 |
gttgtgaatttgggaagatgaagctacctcttgtgtaagaaactgaggagagtgtaaagttaagg-tgagtg-tttgcaaagtagattaagggaatgatg |
216 |
Q |
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| T |
49020137 |
gttgtgcatttgggaagatgaagcttcctcttgtgtagc-----gacaagagcataaagtgaggcctgtttggtttgcatagtgaattaatggaagaatg |
49020043 |
T |
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| Q |
217 |
gatttgagaagttgtgtagttccacaagttttgattatgatctttgttggatatacaaagagacttgattctgataaaacataggcatcaaagtaagagt |
316 |
Q |
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| T |
49020042 |
gatttgagaagttgggttgttccacatgttttgattatgatcttagttggataaacaaagaggcttgattctgataaaacgtatgcatcaaagtaagagt |
49019943 |
T |
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