View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_low_55 (Length: 315)

Name: NF11635_low_55
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_low_55
NF11635_low_55
[»] chr1 (14 HSPs)
chr1 (19-315)||(974872-975168)
chr1 (19-315)||(419993-420289)
chr1 (82-205)||(936173-936296)
chr1 (20-142)||(924022-924144)
chr1 (232-308)||(941993-942066)
chr1 (27-182)||(949102-949263)
chr1 (27-60)||(942241-942274)
chr1 (27-60)||(960202-960235)
chr1 (27-60)||(971511-971544)
chr1 (20-60)||(901855-901895)
chr1 (20-76)||(916037-916093)
chr1 (101-133)||(942174-942206)
chr1 (101-133)||(960123-960155)
chr1 (101-133)||(971444-971476)
[»] scaffold0312 (1 HSPs)
scaffold0312 (19-315)||(10282-10578)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 975168 - 974872
Alignment:
Q  19 attccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagttt 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975168 attccatcttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagttt 975069  T
Q  119 tgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaattgagtctcacttgcagcataattgtaatcaaatggagaa 218  Q
    |||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  975068 tgttccatgatgcaggtccttttccagaaagaagagtgctacatttggtttatcatgtaattgagtctcacttgcagcataattataaataaatggagaa 974969  T
Q  219 cgtccaactccaacattcacatcagtgccacctccttcatagtagccctttctgactccaacatctacaccacccttgcctacatccacccaagttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  974968 cgtccaactccaacattcacatcagtgccacctccttcatagtagccctttctgactccaacatccacaccacccttgcctacatccacccaagttc 974872  T

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Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 419993 - 420289
Alignment:
Q  19 attccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagttt 118  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  419993 attccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtcttagtgaattgcaagttcagttt 420092  T
Q  119 tgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaattgagtctcacttgcagcataattgtaatcaaatggagaa 218  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  420093 tgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaa 420192  T
Q  219 cgtccaactccaacattcacatcagtgccacctccttcatagtagccctttctgactccaacatctacaccacccttgcctacatccacccaagttc 315  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  420193 cgtccaactccaacattcatatcagtgccacctccttcatagtatccctttctgactccaacatctacaccacccttgcctgcatcaacccaagttc 420289  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 936296 - 936173
Alignment:
Q  82 catttgaagtggtcttagagaattgcaagttcagttttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaattg 181  Q
    |||||||| |||| || | ||||||||||||||  |||||||| |||||||| ||||||||          |||||||||||||||||||||||||| ||    
T  936296 catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacatttggtttatcatgtaactg 936197  T
Q  182 agtctcacttgcagcataattgta 205  Q
     || ||||||||||||||||||||    
T  936196 tgtttcacttgcagcataattgta 936173  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 924144 - 924022
Alignment:
Q  20 ttccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagtttt 119  Q
    |||||| |||||||||||||| ||||| |||||||||||||  || ||||||||||| ||| |||     | |||||| | |||||||| ||||| ||||    
T  924144 ttccactttgtttgatgaaaatggtatggaattagcaacttcacgaggcaagaatgttgctccataatctgaggtctttgtgaattgcatgttcaatttt 924045  T
Q  120 gttccatgatgcaagtccttttc 142  Q
    || |||| |||||||||||||||    
T  924044 gtaccattatgcaagtccttttc 924022  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 942066 - 941993
Alignment:
Q  232 cattcacatcagtgccacctccttcatagtagccctttctgactccaacatctacaccacccttgcctacatccacc 308  Q
    ||||||||| ||||||||||||||||||     | ||||||||||||||||||||||||||||||| ||||||||||    
T  942066 cattcacataagtgccacctccttcataca---cttttctgactccaacatctacaccacccttgcttacatccacc 941993  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 949263 - 949102
Alignment:
Q  27 ttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgc------atttgaagtggtcttagagaattgcaagttcagttttg 120  Q
    |||||||||||||||||||| |||||||||||||  |  ||||||||| | | | |      ||||||||| ||||    |||||||||||||| |||||    
T  949263 ttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctcttggaattgcaagttcaattttg 949164  T
Q  121 ttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaattga 182  Q
    ||||||||||||| || |||| |         |||| ||||||| |||||||||||||||||    
T  949163 ttccatgatgcaaatcttttttcaagaagaaaagtgttacattttgtttatcatgtaattga 949102  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 942274 - 942241
Alignment:
Q  27 ttgtttgatgaaaagggtattgaattagcaactt 60  Q
    |||||||||||||||||||| |||||||||||||    
T  942274 ttgtttgatgaaaagggtatggaattagcaactt 942241  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 960235 - 960202
Alignment:
Q  27 ttgtttgatgaaaagggtattgaattagcaactt 60  Q
    |||||||||||||||||||| |||||||||||||    
T  960235 ttgtttgatgaaaagggtatggaattagcaactt 960202  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 971544 - 971511
Alignment:
Q  27 ttgtttgatgaaaagggtattgaattagcaactt 60  Q
    |||||||||||||||||||| |||||||||||||    
T  971544 ttgtttgatgaaaagggtatggaattagcaactt 971511  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 901895 - 901855
Alignment:
Q  20 ttccaccttgtttgatgaaaagggtattgaattagcaactt 60  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  901895 ttccactttgtttgatgaaaagggaatggaattagcaactt 901855  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 916093 - 916037
Alignment:
Q  20 ttccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgt 76  Q
    |||||| |||||||||||||| ||||| |||||||| ||||  || |||||||||||    
T  916093 ttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaagaatgt 916037  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 942206 - 942174
Alignment:
Q  101 gaattgcaagttcagttttgttccatgatgcaa 133  Q
    |||||||||||||| ||||||||||||||||||    
T  942206 gaattgcaagttcaattttgttccatgatgcaa 942174  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 960155 - 960123
Alignment:
Q  101 gaattgcaagttcagttttgttccatgatgcaa 133  Q
    |||||||||||||| ||||||||||||||||||    
T  960155 gaattgcaagttcaattttgttccatgatgcaa 960123  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 971476 - 971444
Alignment:
Q  101 gaattgcaagttcagttttgttccatgatgcaa 133  Q
    |||||||||||||| ||||||||||||||||||    
T  971476 gaattgcaagttcaattttgttccatgatgcaa 971444  T

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Target: scaffold0312 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 10578 - 10282
Alignment:
Q  19 attccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagttt 118  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  10578 attccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtcttagtgaattgcaagttcagttt 10479  T
Q  119 tgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaattgagtctcacttgcagcataattgtaatcaaatggagaa 218  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  10478 tgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaa 10379  T
Q  219 cgtccaactccaacattcacatcagtgccacctccttcatagtagccctttctgactccaacatctacaccacccttgcctacatccacccaagttc 315  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  10378 cgtccaactccaacattcatatcagtgccacctccttcatagtatccctttctgactccaacatctacaccacccttgcctgcatcaacccaagttc 10282  T

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