View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11635_low_58 (Length: 307)

Name: NF11635_low_58
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11635_low_58
NF11635_low_58
[»] chr7 (3 HSPs)
chr7 (6-133)||(27274382-27274510)
chr7 (128-216)||(27274239-27274327)
chr7 (209-294)||(27274037-27274122)
[»] scaffold0061 (6 HSPs)
scaffold0061 (128-216)||(1145-1233)
scaffold0061 (128-216)||(6656-6744)
scaffold0061 (209-293)||(944-1028)
scaffold0061 (209-293)||(6455-6539)
scaffold0061 (67-133)||(1310-1376)
scaffold0061 (67-133)||(6821-6887)
[»] chr6 (1 HSPs)
chr6 (209-294)||(13551294-13551378)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 27274510 - 27274382
Alignment:
Q  6 agtagaaacttgatgaaactttttatggttt-gagcttaaaggattgttgtgacatgttgattttttcaatttgatttattttgttgaagttctttaaat 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27274510 agtagaaacttgatgaaactttttatggttttgagcttaaaggattgttgtgacatgttgattttttcaatttgatttattttgttgaagttctttaaat 27274411  T
Q  105 agatgcaaataatcggggatcatttatat 133  Q
    ||||| | ||||||||||||||| |||||    
T  27274410 agatgtatataatcggggatcatctatat 27274382  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 27274327 - 27274239
Alignment:
Q  128 ttatatagttatcatgatatatcttagatgatgacataaatctatctatacaatttagccgggtcaaggaaatgtgctatgctaatgaa 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27274327 ttatatagttatcatgatgtatcttagatgatgacataaatctatctatacaatttagccgggtcaaggaaatgtgctatgcttatgaa 27274239  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 27274122 - 27274037
Alignment:
Q  209 ctaatgaatgaagccatgatactagaagaaaaaagacggggaaggtctcataaaatacaaaatttgcatacgcattcttaatttct 294  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  27274122 ctaatgaatgaagccatcatactagaagaaaaaagacggggagggtctcataaaatacaaaatttgcatacgcactcttaatttct 27274037  T

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Target: scaffold0061 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 1233 - 1145
Alignment:
Q  128 ttatatagttatcatgatatatcttagatgatgacataaatctatctatacaatttagccgggtcaaggaaatgtgctatgctaatgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1233 ttatatagttatcatgatatatcttagatgatgacataaatctatatatacaatttagccgggtcaaggaaatgtgctatgcttatgaa 1145  T

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Target: scaffold0061; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 6744 - 6656
Alignment:
Q  128 ttatatagttatcatgatatatcttagatgatgacataaatctatctatacaatttagccgggtcaaggaaatgtgctatgctaatgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  6744 ttatatagttatcatgatatatcttagatgatgacataaatctatatatacaatttagccgggtcaaggaaatgtgctatgcttatgaa 6656  T

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Target: scaffold0061; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 1028 - 944
Alignment:
Q  209 ctaatgaatgaagccatgatactagaagaaaaaagacggggaaggtctcataaaatacaaaatttgcatacgcattcttaatttc 293  Q
    ||||||||||||||||| ||||| |||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||    
T  1028 ctaatgaatgaagccatcatactggaagaaaaaataccggtagggtctcataaaatacaaaatttgcatacgcattcttaatttc 944  T

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Target: scaffold0061; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 6539 - 6455
Alignment:
Q  209 ctaatgaatgaagccatgatactagaagaaaaaagacggggaaggtctcataaaatacaaaatttgcatacgcattcttaatttc 293  Q
    ||||||||||||||||| ||||| |||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||    
T  6539 ctaatgaatgaagccatcatactggaagaaaaaataccggtagggtctcataaaatacaaaatttgcatacgcattcttaatttc 6455  T

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Target: scaffold0061; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 1376 - 1310
Alignment:
Q  67 tttttcaatttgatttattttgttgaagttctttaaatagatgcaaataatcggggatcatttatat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  1376 tttttcaatttgatttattttgttgaagttctttaaatagatgtatataatcggggatcatttatat 1310  T

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Target: scaffold0061; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 6887 - 6821
Alignment:
Q  67 tttttcaatttgatttattttgttgaagttctttaaatagatgcaaataatcggggatcatttatat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  6887 tttttcaatttgatttattttgttgaagttctttaaatagatgtatataatcggggatcatttatat 6821  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 13551378 - 13551294
Alignment:
Q  209 ctaatgaatgaagccatgatactagaagaaaaaagacggggaaggtctcataaaatacaaaatttgcatacgcattcttaatttct 294  Q
    ||||||||||||||||| | ||| |||||||||||| ||| | ||||||||| | |||||||||||||||||||||||||||||||    
T  13551378 ctaatgaatgaagccatcacactggaagaaaaaagatggg-agggtctcatacagtacaaaatttgcatacgcattcttaatttct 13551294  T

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