View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_62 (Length: 297)
Name: NF11635_low_62
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 7082101 - 7081839
Alignment:
| Q |
20 |
aacctttccctcacctctacttcaacactaaaaccaaatctannnnnnnnnnnnnnnnnnacttgttcccaaaatggaattttctggttttgaaggcttt |
119 |
Q |
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| T |
7082101 |
aacctttctctcacctctacttcaacactaaaaccaaatctatctatctctccctctctcacttgttcccaaaatggaattttctggttttgaaggcttt |
7082002 |
T |
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| Q |
120 |
gaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagtttgaatccattcaacaaa |
219 |
Q |
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| T |
7082001 |
gaaaaaagattagaacttcatttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagtttgaatccattcaacaaa |
7081902 |
T |
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| Q |
220 |
tcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatg |
282 |
Q |
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| T |
7081901 |
tcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatg |
7081839 |
T |
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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 102 - 277
Target Start/End: Original strand, 49019792 - 49019958
Alignment:
| Q |
102 |
tctggttttgaaggctttgaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagt |
201 |
Q |
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| T |
49019792 |
tctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatccaatt---acctt------ccaactaggtctaagaaaaattgatt |
49019882 |
T |
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| Q |
202 |
ttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgc |
277 |
Q |
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| T |
49019883 |
ttgaatcaatacaacaagttttagaagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatgc |
49019958 |
T |
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