View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_63 (Length: 290)
Name: NF11635_low_63
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 53491346 - 53491075
Alignment:
| Q |
1 |
tagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaata |
100 |
Q |
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| T |
53491346 |
tagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaata |
53491247 |
T |
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| Q |
101 |
aatcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgc |
200 |
Q |
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| T |
53491246 |
aatcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgc |
53491147 |
T |
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| Q |
201 |
tcaatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacata |
272 |
Q |
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| T |
53491146 |
tcaatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacata |
53491075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 53498936 - 53498671
Alignment:
| Q |
5 |
aaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatc |
104 |
Q |
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| T |
53498936 |
aaataaacaggttatctatgttgtcctgttgttgctcttatattctcacat--gtcattttgcttctaccctgtatgttcaatgagacaccaaataaatc |
53498839 |
T |
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| Q |
105 |
acttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctcaa |
204 |
Q |
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| T |
53498838 |
acttcaattttgcacaggtttgtgttgttcgacgtgataatggagcaaagattcacattgctaatgctgatttggttgaagaaattagaaagttcctcaa |
53498739 |
T |
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| Q |
205 |
tatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacata |
272 |
Q |
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| T |
53498738 |
taatattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacata |
53498671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 16070022 - 16069755
Alignment:
| Q |
5 |
aaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatg-agataccaaataaat |
103 |
Q |
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| T |
16070022 |
aaataagcaggttattaatgttgttatattattgcacttgtattctttcatatgtcattatgcttttatcttttattttcaatgcaaacatcaa-taaac |
16069924 |
T |
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| Q |
104 |
cacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctca |
203 |
Q |
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| T |
16069923 |
cttttcaattttgcataggtttgtgttgttcgacgtgataatggtgcaaagattgacattgctaatgctgatttagttgaagaaataaaaaagttgctca |
16069824 |
T |
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| Q |
204 |
atatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacata |
272 |
Q |
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||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16069823 |
ataatgttcaacaaaatatgttggatgttgcaaaacagaaacgagatgaatgtattcaagtcatacata |
16069755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 45355538 - 45355700
Alignment:
| Q |
110 |
aatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctcaatatca |
209 |
Q |
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|||||| ||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||| ||| | |
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| T |
45355538 |
aattttgcacaggtccgtgctgttcgtcgtgatagcggagcaaagatcgacattggtaatgatgatttggttgtggaaataaagaagttgctcgataata |
45355637 |
T |
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| Q |
210 |
ttcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacata |
272 |
Q |
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||||||| ||| |||| ||||| |||||||| |||||||||| ||||||||| ||||||||| |
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| T |
45355638 |
ttcaacagaatttgtttgatgtcgcaaaacacaaacgagatgcatgtattcagatcatacata |
45355700 |
T |
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