View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_66 (Length: 277)
Name: NF11635_low_66
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 1841379 - 1841121
Alignment:
| Q |
1 |
caacaaaatagagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattg |
100 |
Q |
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| T |
1841379 |
caacaaaatggagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattg |
1841280 |
T |
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| Q |
101 |
cactttcagccactattcccggcttgagcaaggtaaatttgtcactagtttcatcgggtccattattcgtataacatattttgatcatatttttctaaaa |
200 |
Q |
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| T |
1841279 |
cactttcagccactattcccggcttgagcaaggtaaatttgtcactagtttcatcggatccattattcgtataatatattttgatcatatttttctaaaa |
1841180 |
T |
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| Q |
201 |
ttttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgatt |
259 |
Q |
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| T |
1841179 |
ttttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgatt |
1841121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 1824048 - 1823912
Alignment:
| Q |
11 |
gagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattgcactttcagc |
110 |
Q |
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| T |
1824048 |
gagtgaagaaaggtagaagcagttcacaatgtattgatcatataatggcagagagaaaaaggagacaagaattgtctgaaaaattcattgcactttcggc |
1823949 |
T |
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| Q |
111 |
cactattcccggcttgagcaaggtaaatttgtcacta |
147 |
Q |
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| T |
1823948 |
tactattcctggattgagcaaggtaaatttgtaacta |
1823912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 1820920 - 1820857
Alignment:
| Q |
196 |
taaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgatt |
259 |
Q |
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| T |
1820920 |
taaaattttacgattccttctttatagatggacaaggcttcattacttcgagaagcgattgatt |
1820857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 4701153 - 4701117
Alignment:
| Q |
161 |
cattattcgtataacatattttgatcatatttttcta |
197 |
Q |
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| T |
4701153 |
cattattcatataacatgttttgatcatatttttcta |
4701117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 53801036 - 53801064
Alignment:
| Q |
170 |
tataacatattttgatcatatttttctaa |
198 |
Q |
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| T |
53801036 |
tataacatattttgatcatatttttctaa |
53801064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 12514363 - 12514399
Alignment:
| Q |
161 |
cattattcgtataacatattttgatcatatttttcta |
197 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |
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| T |
12514363 |
cattattcatataacatattttaatcatatttttcta |
12514399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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