View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_71 (Length: 248)
Name: NF11635_low_71
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_71 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 40571276 - 40571044
Alignment:
| Q |
16 |
tgtgaacttggggtaattgaatctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgt |
115 |
Q |
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| T |
40571276 |
tgtgaacttggggtaattgaatctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgt |
40571177 |
T |
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| Q |
116 |
ggcgtaggtttttcgcccagaatcagctgcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgt |
215 |
Q |
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| T |
40571176 |
ggcgtaggtttttcgcccagaatcagctgcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgt |
40571077 |
T |
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| Q |
216 |
gtcatgttgatatcctgaattatttggctcaat |
248 |
Q |
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| T |
40571076 |
gtcatgttgatatcctgaattatttggctcaat |
40571044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 40577681 - 40577481
Alignment:
| Q |
37 |
tctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgtggcgtaggtttttcgcccaga |
136 |
Q |
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| T |
40577681 |
tctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccacacatcctgtggcgtaggttttttcctcaga |
40577582 |
T |
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| Q |
137 |
atcagct------gcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcc |
230 |
Q |
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| T |
40577581 |
atcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagtt---gagatgtgaaaatgtgtcacgttgatttcc |
40577485 |
T |
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| Q |
231 |
tgaa |
234 |
Q |
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| T |
40577484 |
tgaa |
40577481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 40566583 - 40566375
Alignment:
| Q |
22 |
cttggggtaattgaatctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgtggcgta |
121 |
Q |
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| T |
40566583 |
cttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggtgta |
40566484 |
T |
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| Q |
122 |
ggtttttcgcccagaatcagctgcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatg |
221 |
Q |
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| T |
40566483 |
gttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaatgtgtcatg |
40566384 |
T |
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| Q |
222 |
ttgatatcc |
230 |
Q |
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| T |
40566383 |
ttcatatcc |
40566375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 40595823 - 40595756
Alignment:
| Q |
162 |
gtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatc |
229 |
Q |
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| T |
40595823 |
gtgtcacatccaactgctatcaacttgttttgagttggcgagacgtgaaaatgtggcatcttgatatc |
40595756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 40589416 - 40589340
Alignment:
| Q |
165 |
tcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcctgaattatttg |
241 |
Q |
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| T |
40589416 |
tcacagccaactgctaccaacttgtttcgagtgggagagaggtgaaaatgtgtcatgttgataaactgaattgtttg |
40589340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 8490797 - 8490733
Alignment:
| Q |
162 |
gtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgat |
226 |
Q |
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| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgat |
8490733 |
T |
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