View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_73 (Length: 241)
Name: NF11635_low_73
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38707907 - 38708129
Alignment:
| Q |
1 |
catatgattagacttgacatgtcggaatacatggaaaaagactctatcaagattgattggtgcaacaccagggtaagatattgtattaacaactgcattt |
100 |
Q |
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| T |
38707907 |
catatgattagactcgacatgtcggaatacatggaaaaagactctatcaagattgattggtgcaccaccagggtaagatattgtatcaacaactgcattt |
38708006 |
T |
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| Q |
101 |
gattatagtaaaggcctaaattatacttggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgt |
200 |
Q |
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| T |
38708007 |
gattatagtaaaggcctaaattatacttggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgt |
38708106 |
T |
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| Q |
201 |
aggtcacattagtcatttataaa |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
38708107 |
cggtcacattagtcatttataaa |
38708129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 10046122 - 10046333
Alignment:
| Q |
8 |
ttagacttgacatgtcggaatacatggaaaaagactc--tatcaagattgattggtgcaacaccagggtaagatattgtattaacaactgcatttgatta |
105 |
Q |
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| T |
10046122 |
ttagacttgacatgtcggaatacatggagaaatactccgtatcaagattgattggtgcaccaccagggtaagatattgtatttttagctgcatttgatta |
10046221 |
T |
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| Q |
106 |
tagtaaaggcctaaattatacttggagat-aaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggt |
204 |
Q |
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| T |
10046222 |
tagtaaaagcctaaattaaactaggagataaaaaaaattaatacgtttggtccat-ggaaaaagctacaaatttggtctttaaatatttcaaatgtcgat |
10046320 |
T |
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| Q |
205 |
cacattagtcatt |
217 |
Q |
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| T |
10046321 |
caaattagtcatt |
10046333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 42449903 - 42449709
Alignment:
| Q |
17 |
acatgtcggaatacatggaaaaagact--ctatcaagattgattggtgcaacaccagggtaagatattgtattaacaactgcatttgattatagtaaagg |
114 |
Q |
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|||||||||| ||||||||| || ||| || ||||||||||||| |||| |||||| ||||| ||||| | || |||||| |||||||||||||||| | |
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| T |
42449903 |
acatgtcggagtacatggaacaacactatctgtcaagattgattgatgcagcaccagagtaagttattggactagcaactgaatttgattatagtaaaag |
42449804 |
T |
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| Q |
115 |
cctaaatt-atacttggagataaaacatttaatatgtttggtccatggga---aagagctacaaatttggtctttaaatatttcaaatgtaggtca |
206 |
Q |
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| T |
42449803 |
gctaaattaatactttgagataaaacacataa-gtgttttgtccatgtgaaataagagctacaaagttggtctttcaatatttcaaatgtcggtca |
42449709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 45467981 - 45468051
Alignment:
| Q |
14 |
ttgacatgtcggaatacatggaaaaagactct--atcaagattgattggtgcaacaccagggtaagatatt |
82 |
Q |
| |
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||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
45467981 |
ttgacatgtcggaatacatggaacaacactctgtatcaagattgattggtgcaccaccagggtaagttatt |
45468051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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