View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_8 (Length: 643)
Name: NF11635_low_8
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Original strand, 39261837 - 39262446
Alignment:
| Q |
18 |
gagagaaagacaagcaggtatggccgcctgtggactattattgttgatctcttttcatcattcatcaattaaattaattgaaatattttgtctgcttgat |
117 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261837 |
gagagaaagacaagcaggtatggccgcttgtggactattattgttgatctcttttcatcattcatcaattaaattaattgaaatattttgtctgcttgat |
39261936 |
T |
|
| Q |
118 |
tctgagcagatgaaagaaatgatccctcatccttgcctgtgcaaggggaaattcgagtagataatgggagtaagacaagtagttcaagcagctcaagcag |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261937 |
tctgagcagatgaaagaaatgatccctcatccttgcctgtgcaaggggaaattcgagtagataatgggagtaagacaagtagttcaagcagctcaagcag |
39262036 |
T |
|
| Q |
218 |
tgattctggctcttcatctagtggtatattaaataattatttaatagatatctgtcccataatttattgttatacaaggtcaatctcgcttatactttaa |
317 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39262037 |
tgattctggctcttcatctagtggtatagtaaataattatttaatagatatctgtcccataatttattgttatacaaggtcaatctcgcttatactttaa |
39262136 |
T |
|
| Q |
318 |
tatctgatattaatgtgctttggcagattctgatagtgatagctcctcagcatccgggtctgatgcagggtcacaatgaacctaaatacctcccgtaagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39262137 |
tatctgatattaatgtgctttggcagattctgatagtgatagttcctcagcatccgggtctgatgcagggtcacaatgaacctaaatacctcccgtaagg |
39262236 |
T |
|
| Q |
418 |
taaaatcacaaacttcaannnnnnnatctcgttatatgctcttcttgttgtcttgtatgttttcttcatcaaattgtctgtgcttctttcttttgattac |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39262237 |
taaaatcacaaacttcaatttttttatctcgttatatgctcttcttgttgtcttgtatgttttcttcatcaaattgtctgtgcttcttgcttttgattac |
39262336 |
T |
|
| Q |
518 |
atagaggtatatatgtgttatcttcaagatgggaggttgagtgcatttctatatttctagttcaccaggctcgttatgtgttatactgcttactgagcca |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39262337 |
atagaggtatatatgtgttatcttcaagatgtgaggttgagtgcatttctatttttctagttcaccaggctcgttatgtgttatactgcttactaagcca |
39262436 |
T |
|
| Q |
618 |
gttaagttta |
627 |
Q |
| |
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|||||||||| |
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| T |
39262437 |
gttaagttta |
39262446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Original strand, 39250747 - 39251369
Alignment:
| Q |
18 |
gagagaaagacaagcaggtatggccgcctgtggac--tattattgttgatctcttttcatcattcatcaattaaattaattgaaatattttgtctgcttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39250747 |
gagagaaagacaagcaggtatggccgcttgtggacactattattgttgatctcttatcatcattcatcaattaaattaattgaaatattttgtctgcttg |
39250846 |
T |
|
| Q |
116 |
attctgagcagatgaaagaaatgatccctcatccttgcctgtgcaaggggaaattcgagtagataat---gggagtaagacaagtagttcaagcagctca |
212 |
Q |
| |
|
|||||||||||||||||||||| | || | |||||| |||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||| |
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| T |
39250847 |
tttctgagcagatgaaagaaatgcttccccgtccttggctgtgcaaggggaaattcgagtcgataataatgggaataagacaagtagctcaagcagctca |
39250946 |
T |
|
| Q |
213 |
agcagtgattctggctcttcatctagtggtatattaaataattatttaatagatatctgtcccataatttattgttatacaaggtcaatctcgcttatac |
312 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||| |
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|
| T |
39250947 |
agcagtgattccggctcttcaacaagtggtatattaaataattatttaatagatatctgtcccataatttatggttatacaaggtcaacctggcttttac |
39251046 |
T |
|
| Q |
313 |
-----------tttaatatctgatattaatgtgctttggcagattctgatagtgatagctcctcagcatccgggtctgatgcagggtcacaatgaaccta |
401 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||||||||||||||||||||||||| | || ||||||||| |||||||||| |||||||| |
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|
| T |
39251047 |
ttttattcaaatttaatgtttgataataatgtgcttttgcagattctgatagtgatagctcctcatcgtctgggtctgattcagggtcacagtgaaccta |
39251146 |
T |
|
| Q |
402 |
aatacctcccgtaaggtaaaatcacaaacttcaannnnnnnatctcgttatatgctcttcttgttgtcttgtatgttttcttcatcaaattgtctgtgct |
501 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39251147 |
aatacctcc--taaggtaaaatcacaaactccaa-gtttttatctcgttatatgttcttcttgttgtcttgtatgttttctgcatcaaattgtctgtgct |
39251243 |
T |
|
| Q |
502 |
tctttcttttgattacatagaggtatatatgtgttatcttcaagatgggaggttgagtgcatttctatatttctagttcaccaggctcgttatgtgttat |
601 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | || ||| ||||| |||||||||||| |
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| T |
39251244 |
gctttcttttgatttcatagaggtatatatgtgttatcttcaagatatgaggttgaatgcatttctatttttgtggtgcacaaggcttgttatgtgttat |
39251343 |
T |
|
| Q |
602 |
actgcttactgagccagttaagttta |
627 |
Q |
| |
|
|||||||||| ||||||||||||||| |
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|
| T |
39251344 |
actgcttactaagccagttaagttta |
39251369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 30813448 - 30813539
Alignment:
| Q |
117 |
ttctgagcagatgaaagaaatgatccctcatccttgcctgtgcaaggggaaattcgagtagataatgggagtaagacaagtagttcaagcag |
208 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||||| ||||||||| || || || ||||||| ||||| |||||||||||||||| |
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|
| T |
30813448 |
ttctgtgcagatgaaagaaatgttcccccatccttgcctatgcaagggggaagtcaagcagataataagagtagatcaagtagttcaagcag |
30813539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 4709784 - 4709840
Alignment:
| Q |
443 |
atctcgttatatgctcttcttgttgtcttgtatgttttcttcatcaaattgtctgtg |
499 |
Q |
| |
|
||||| ||||||||||||| || |||||||||| |||||| ||||||||||| |||| |
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|
| T |
4709784 |
atctcattatatgctcttcctggtgtcttgtatattttctgcatcaaattgtttgtg |
4709840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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