View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11635_low_80 (Length: 209)
Name: NF11635_low_80
Description: NF11635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11635_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 6111057 - 6111231
Alignment:
| Q |
17 |
atatatatctaattgacttactttaacaagttctttaataactttctattgtatgctatactacttaattcatgagctgaatatgcatagtataggtgta |
116 |
Q |
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| T |
6111057 |
atatatatctaattgacttactttaacaagttctttaagaaatttctattgtatgctatactacttaattcatgagctgaatatgtatagtatagatgta |
6111156 |
T |
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| Q |
117 |
tagaagccaaatattagtnnnnnnnnttggttttcatttaccttgatcttgtgttgaatgaagtctattaatcacag |
193 |
Q |
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| T |
6111157 |
tggaagccaaatattagtaaaaaag--tggaactcatttaccttgatcttgtgttgaataaactctattaatcacag |
6111231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 6249386 - 6249475
Alignment:
| Q |
47 |
ttctttaataactttctattgtatgctata--ctacttaattcatgagctgaatatgcatagtataggtgtatagaagccaaatattagt |
134 |
Q |
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| T |
6249386 |
ttctttaataactttttattgtatgatatatgcaagttaattcatgagctgaatatgcatagtaaagttgtttagaagtcaaatattagt |
6249475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 6183291 - 6183332
Alignment:
| Q |
151 |
catttaccttgatcttgtgttgaatgaagtctattaatcaca |
192 |
Q |
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| T |
6183291 |
catttaccttgatattgtgttgaataaagtctattaatcaca |
6183332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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