View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11636_high_13 (Length: 389)
Name: NF11636_high_13
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_high_13 |
 | |
|
| [»] scaffold0755 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 48577578 - 48577798
Alignment:
| Q |
21 |
ttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
48577578 |
ttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagattgagaaggagggatgtgaatag |
48577676 |
T |
|
| Q |
121 |
ccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| | |
|
|
| T |
48577677 |
ccggcggcctgtgataaattgatgttcaacagtgcggcggagggcggtggttgaagcttatggcggcggacgacgaagaaaaccgatggtggtttctgga |
48577776 |
T |
|
| Q |
221 |
tcgcgttttctgaaagcgagaa |
242 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48577777 |
tcgcgttttctgaaagcgagaa |
48577798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 32955469 - 32955604
Alignment:
| Q |
158 |
cggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctgaaagcgagaaagaaaacttgcgttt |
257 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32955469 |
cggagggcgatggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttctgaatcgcgttttctggaagcgagaaagaaaacttgcgttt |
32955568 |
T |
|
| Q |
258 |
tctgttttctaggaaccaaaaccggagggcgttgtg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955569 |
tctgttttctaggaaccaaaaccggagggcgttgtg |
32955604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 32955362 - 32955467
Alignment:
| Q |
17 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32955362 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagattgagaaggagggatgtca |
32955460 |
T |
|
| Q |
117 |
atagccg |
123 |
Q |
| |
|
||||||| |
|
|
| T |
32955461 |
atagccg |
32955467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 32954405 - 32954367
Alignment:
| Q |
341 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954405 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
32954367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 32955653 - 32955691
Alignment:
| Q |
341 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
379 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
32955653 |
ataagccttgacacatgttaaaatatgattggtcctatg |
32955691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 27981429 - 27981465
Alignment:
| Q |
343 |
aagccttgacacgtgtcaaaatatgattggtcctatg |
379 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
27981429 |
aagccttgacacgtgtcaaaatttgattggttctatg |
27981465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 5913128 - 5913356
Alignment:
| Q |
17 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
5913128 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagaatgagaaggagggatgtga |
5913226 |
T |
|
| Q |
117 |
atagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5913227 |
atagccggcggcctgtgataaattgatgttcaacagtgtggtggagggtggtggttgatggttatggcggcggacggcgaagaaaaccggtggtgggttc |
5913326 |
T |
|
| Q |
217 |
tgaatcgcgttttctgaaagcgagaaagaa |
246 |
Q |
| |
|
|| ||||||||| ||| ||| ||||||||| |
|
|
| T |
5913327 |
tggatcgcgtttgctggaagggagaaagaa |
5913356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 33294399 - 33294542
Alignment:
| Q |
69 |
aacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggt |
168 |
Q |
| |
|
||||||| |||||| || ||||| |||||||||||| || |||||| ||| |||||||||||||| | ||||||||||||| | | ||| ||| ||| |
|
|
| T |
33294399 |
aacaacaaggattccattgaata-tgagattgagaaagatggatgtgaatctccggcggcctgtgacagattgatgttcgacggcaaggcggggggtggt |
33294497 |
T |
|
| Q |
169 |
ggttgaaggttatggcggcggacggcgaagaaaaccggtggtggt |
213 |
Q |
| |
|
||||||||||||| || || ||| ||||||||||||||||||||| |
|
|
| T |
33294498 |
ggttgaaggttattgcagcagacagcgaagaaaaccggtggtggt |
33294542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 32838382 - 32838239
Alignment:
| Q |
69 |
aacaacatggattcaatcgaatactgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggt |
168 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||||||| |||||| ||| ||| || ||||||| | ||||||||||||| | | ||| ||| ||| |
|
|
| T |
32838382 |
aacaacaaggattccattgaata-tgagattgagaaggatggatgtgaatctccgacgccctgtgacagattgatgttcgacggcaaggcggggggtggt |
32838284 |
T |
|
| Q |
169 |
ggttgaaggttatggcggcggacggcgaagaaaaccggtggtggt |
213 |
Q |
| |
|
||||||||||||| || || ||| ||||||||||| |||||||| |
|
|
| T |
32838283 |
ggttgaaggttattgcagcagacaacgaagaaaaccagtggtggt |
32838239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 5913424 - 5913462
Alignment:
| Q |
341 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5913424 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
5913462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 50672179 - 50671946
Alignment:
| Q |
19 |
ccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatactgagattgagaaggagggatgtcaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
50672179 |
ccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatggattcaatcgaatac-gagattgagaaggagggatgtgaat |
50672081 |
T |
|
| Q |
119 |
agccggcggcctgtgataaattgatgttcgacagtgc-------gacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtg |
211 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50672080 |
aaccgacggcctgtgataaattgatgttcaacagtgcggcggagggcggagggcggtggttgatggttatggcggcggacggcgaagaaaaccggtggtg |
50671981 |
T |
|
| Q |
212 |
gtttctgaatcgcgttttctgaaagcgagaaagaa |
246 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
50671980 |
gtttctggatcgcgtttgctggaagcgagaaagaa |
50671946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 10463366 - 10463136
Alignment:
| Q |
17 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacat--ggattcaatcgaatactgagattgagaaggagggatgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10463366 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatatggattcaatcgaatac-gagattgagaaggagggatgt |
10463268 |
T |
|
| Q |
115 |
caatagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtt |
214 |
Q |
| |
|
|||| ||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
10463267 |
gaataaccgacgacctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggtt |
10463168 |
T |
|
| Q |
215 |
tctgaatcgcgttttctgaaagcgagaaagaa |
246 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||| |
|
|
| T |
10463167 |
tctggatcgcgtttgctggaagcgagaaagaa |
10463136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 43733020 - 43732790
Alignment:
| Q |
17 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacat--ggattcaatcgaatactgagattgagaaggagggatgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43733020 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacatatggattcaatcgaatac-gagattgagaaggagggatgt |
43732922 |
T |
|
| Q |
115 |
caatagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtt |
214 |
Q |
| |
|
|||| ||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
43732921 |
gaataaccgacgacctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggtggcggacggcgaagaaaaccggtggtggtt |
43732822 |
T |
|
| Q |
215 |
tctgaatcgcgttttctgaaagcgagaaagaa |
246 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||| |
|
|
| T |
43732821 |
tctggatcgcgtttgctggaagcgagaaagaa |
43732790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 50674141 - 50674179
Alignment:
| Q |
341 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
379 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50674141 |
ataagccttgacacgtgtcaaaatctgattggtcctatg |
50674179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 50671842 - 50671804
Alignment:
| Q |
341 |
ataagccttgacacgtgtcaaaatatgattggtcctatg |
379 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
50671842 |
ataagccttgacacgtgtcaaaatctgattgatcctatg |
50671804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 25864205 - 25864435
Alignment:
| Q |
17 |
acccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaacaacat--ggattcaatcgaatactgagattgagaaggagggatgt |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25864205 |
acccttgacacaccaaaaatcgtcttgataagccaaaaatcttattcaccaaaacaacatatggattcaatcgaatac-gagattgagaaggagggatgt |
25864303 |
T |
|
| Q |
115 |
caatagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggtt |
214 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
25864304 |
gaataaccgacggcctgtgataaattgatgtacaacagtgcggcggagggcggtggttgatggttacggcggcagacggcgaagaaaaccaatggtggtt |
25864403 |
T |
|
| Q |
215 |
tctgaatcgcgttttctgaaagcgagaaagaa |
246 |
Q |
| |
|
|||| || |||||| ||| ||||||||||||| |
|
|
| T |
25864404 |
tctggattgcgtttgctggaagcgagaaagaa |
25864435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 32327345 - 32327272
Alignment:
| Q |
136 |
aaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtgg |
209 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |||| ||||| || | | |||||||||||| |||| |
|
|
| T |
32327345 |
aaattgatgttcgacggtgcggcggagggcggtggttgcaggtcatggcagcagccagcgaagaaaaccagtgg |
32327272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 5723478 - 5723358
Alignment:
| Q |
93 |
tgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacg |
192 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||||||| | ||||||||||||| | | ||| ||| |||||||||||||||| ||||| |||| |
|
|
| T |
5723478 |
tgagattgagaaggatggatgtgaatctccggcggcctgtgacagattgatgttcgacggcaaggcggggggtggtggttgaaggttattgcggcagacg |
5723379 |
T |
|
| Q |
193 |
gcgaagaaaaccggtggtggt |
213 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
5723378 |
gtgaagaaaaccggtggtggt |
5723358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 203119 - 203034
Alignment:
| Q |
128 |
cctgtgataaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtggtggt |
213 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
203119 |
cctgtgacaaattgatgttcgacagtgcggcggagggcggtggttgcaggtcatggcggcgatcggcgaagaaaacaagtggtggt |
203034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 53953349 - 53953401
Alignment:
| Q |
93 |
tgagattgagaaggagggatgtcaatagccggcggcctgtgataaattgatgt |
145 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
53953349 |
tgagattgagaaggagggatgtgaatcgccggcggcctgtgatagattgatgt |
53953401 |
T |
|
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Target: scaffold0755 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 4677 - 4604
Alignment:
| Q |
136 |
aaattgatgttcgacagtgcgacggagggcggtggttgaaggttatggcggcggacggcgaagaaaaccggtgg |
209 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |||| ||||| || | || || |||||||| |||| |
|
|
| T |
4677 |
aaattgatgttcgacggtgcggcggagggcggtggttgcaggtcatggcagcagccgacgtagaaaaccagtgg |
4604 |
T |
|
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