View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_high_23 (Length: 238)
Name: NF11636_high_23
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 8354917 - 8354681
Alignment:
| Q |
2 |
agatagactagggtgtatttttgaactgagtctcttacaacaacaaaaacaaaacagttatccatgatatatctat------------cattcccaaagc |
89 |
Q |
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| T |
8354917 |
agatagactagggtgtatttttgaactgagtct--tacaacaacaaaaacaaaacagttatccatgatatatatatatatatatatatcattcccaaagc |
8354820 |
T |
|
| Q |
90 |
aaaaggttttaggtt-----gcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcacaagacgctgaaaagcttcattgat |
184 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8354819 |
aaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcaaaagacgctgaaaagcttcattgat |
8354720 |
T |
|
| Q |
185 |
tgtatcagctttgattaattcaatgtcacatgtgatatt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
8354719 |
tgtatcagctttgattaattcaatgtcacatgtgatatt |
8354681 |
T |
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