View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_high_3 (Length: 628)
Name: NF11636_high_3
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Original strand, 40546978 - 40547589
Alignment:
| Q |
19 |
atgttggccattgaaatgaagaggaattaagtcattcatcatcaagaaacgtggaagagaagaggaagaagacatggctattattat------------- |
105 |
Q |
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| T |
40546978 |
atgttggccattgaaatgaagaggaattaagtcattcatcatcaagaaacgtggaagagaagaggaagaagacatggctattattatcataatcataatg |
40547077 |
T |
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| Q |
106 |
-----aacagtgataaatttggtcatttttcatgggaatgtcgtagtgctcatataccactaaaaattcaccatttagcaaccagtttaatgaccgagtt |
200 |
Q |
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| T |
40547078 |
cttataacagtgataaatttggtcatttttcatgggaatgtcgtagtgctcatataccactaaaaattcaccatgtagcaaccagtttaatgaccgagtt |
40547177 |
T |
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| Q |
201 |
atttcagtcaccatagagaccaaattaatgagtctgtgatcgatttgtgaaatgactctaaaccactagtagctaatgt-gcatatgccaaggaatacaa |
299 |
Q |
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| T |
40547178 |
atttcagtcaccatagagacca----aataagtctgtgatcgatttgtgaaatgactctaaaccactagtagctaatgtggcatatgccaaggaatacaa |
40547273 |
T |
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| Q |
300 |
tgcttaccttgaa--------tctaaaattcactcaagcaaaatgcttagcatatggctttgataaatatacaaagttatttctataaataaatattggc |
391 |
Q |
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| T |
40547274 |
tgcttaccctaaaccctaaaccctaaaattcacttaagcaaaatgcttagcatatggctttgataaatatacaaaattatttctataaataaatattggc |
40547373 |
T |
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| Q |
392 |
taaatcttgagactttctttaattccgataaatttttcaaaatccaactcgtctaaagtatttcctatacaaattatacaagccaaggtnnnnnnnnnnn |
491 |
Q |
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| T |
40547374 |
taaattttcagactttctttaattccgataaatttttcaaaatccaactcgtctaaagtatttcgtatacaaattatacaagtcaaggt-------aaaa |
40547466 |
T |
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| Q |
492 |
nnnnnnngcacagattatatattaattgaaccaagtgataatgagtttctcttatgacgaatcggtcaagagaaaccgaattcgattcttgatggaaaca |
591 |
Q |
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| T |
40547467 |
aaaaaaagcacagattatatattaattgaaccaagtgataatgagtttctcttttgatgaatcggtcaagagaaaccgaattcgattcttgatggaaaca |
40547566 |
T |
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| Q |
592 |
attcttgatcaaactttattctt |
614 |
Q |
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| T |
40547567 |
attcttgatcaaactttattctt |
40547589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 598
Target Start/End: Original strand, 33179449 - 33179497
Alignment:
| Q |
550 |
gaatcggtcaagagaaaccgaattcgattcttgatggaaacaattcttg |
598 |
Q |
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| T |
33179449 |
gaatcgttcaggagaagccgagttcgattcctgatggaaacaattcttg |
33179497 |
T |
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