View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_high_5 (Length: 621)
Name: NF11636_high_5
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 608
Target Start/End: Original strand, 3724423 - 3725018
Alignment:
| Q |
21 |
ttaacacttccactttactgtaattggagctaggctttacaacctttggagcaacggaagaaacatagagnnnnnnntgtcatgaccacatttgtaaata |
120 |
Q |
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| T |
3724423 |
ttaacacttccactttactgtaattggagctaggctttacaacctttggagcaacgaaagaaacatagagaaaaaaatgtcatgaccacatttgtaaata |
3724522 |
T |
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| Q |
121 |
acaaaagatgtagttaatagttatatgcctgacaacttaagaactaaa-----------tgttagatataaaaaacacgcttaacttgccctaacannnn |
209 |
Q |
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| T |
3724523 |
acaaaagatgtagttaatagttatatgcttgacagcttaagaactaaacgttaaatacatgttagatataaaaaacacgcttaacttgccctaacatttt |
3724622 |
T |
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| Q |
210 |
nnnnnnnngaataaaaatttgccctaacattgcatcttttatatagccaacattttattcattcataggtgatgacttacattctagttaaatacaaaac |
309 |
Q |
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| T |
3724623 |
tttttt--gaaaaaatttttgccctaacattgcatcttttatatatccaacattttatccattcataggtgatgacttacattctagttaaatacaaaac |
3724720 |
T |
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| Q |
310 |
ctgaatacaagtagattttacactagtagtcgggtgtgtatgttagtaggtgtgacaaactaatnnnnnnnnnnnnnnnnnngtgtagaaatatacatca |
409 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
3724721 |
ctgaatacaagtagattttacactagtagtcgtgtgtgtatgttagtaggtgtgacaaactaataaaaaagaaacaaaaaa-gtgtagaactatacatca |
3724819 |
T |
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| Q |
410 |
aatatattcctgttttcttacacctcattggaacaaaacttttaagattgttagatatttgaggaggagctaaatagaagtctatcatgggatgggagag |
509 |
Q |
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| T |
3724820 |
aatatattcctgttttcttacacctcattggaacaaaacttttaagattgttggatatttgaggaggagctaaataaaagtctatcatgggatgggagag |
3724919 |
T |
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| Q |
510 |
aaatgcatagaaaaaataagacatgagttgaaatttgactaatacacttactagattaagattacaaccatctgagtttaattttattgggttcatctc |
608 |
Q |
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|||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3724920 |
aaatgcatagcaaaaatacgacatgagttaaaatttgactaatacacttactagattaagattacaaccatctgagtttaattttattggtttcatctc |
3725018 |
T |
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