View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_high_7 (Length: 530)
Name: NF11636_high_7
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 515
Target Start/End: Original strand, 25524347 - 25524849
Alignment:
| Q |
11 |
atcatcagtacacccgatccacctgtattagcaacaaccatatcgcgtccgatagcagccgtgagccgaaagagacctaatgccatttggtgcaccataa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25524347 |
atcatcagtacacccgatccacctgtattagcaacaaccatatcgcgtccgatagcagctgtgagccgaaagagacctaatgccatttggtgcaccataa |
25524446 |
T |
|
| Q |
111 |
gcaataaaagcatgtagcggaagaacctgaaatattaaccggaatgccaagagtatgtatgagttttaaaagaagacagnnnnnnnngtcataagacagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||| |
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| T |
25524447 |
gcaataaaagcatgtagcggaagaacctgaaatattaaccggaatgccaagagtatgtattagttt-aaaagaagacagaaaaaaa-gtcataagagagt |
25524544 |
T |
|
| Q |
211 |
atatgaatgtaaagtaaaatacctcccaggtgcaggagcaaatccaataatgtagtacacgacaccagtccatgcaacagattcaacaatggaataagga |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25524545 |
atatgaatgtaaagtaaaatacctcccaggtgcaggagcaaatccaataatgtagtacacgacaccagtccacgcaacagattcaacaatggaataagga |
25524644 |
T |
|
| Q |
311 |
aattgaagaatccatgtggacaatgtccatgcccatgccggataaaataaattgcctctttgtttatagaagacaggaagacgaaatatcaaaagtgaca |
410 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524645 |
aattgaagaatccatgtggacagtgtccatgcccatgccggataaaataaattgcctctttgtttatagaagacaggaagacgaaatatcaaaagtgaca |
25524744 |
T |
|
| Q |
411 |
actcagtagtcccattaaacagcatgtgcaccaatgcataaaatagtgcagacatgtagagattccccgaaagttcgttcttaggataagtttttaagtg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25524745 |
actcagtagtcccattaaacagcatgtgcaccaatgcataaaatagtgcagacatgtagagattccccgaaagttcgttcttaggataagtttttacgtg |
25524844 |
T |
|
| Q |
511 |
aaggt |
515 |
Q |
| |
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||||| |
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| T |
25524845 |
aaggt |
25524849 |
T |
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