View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_high_9 (Length: 458)
Name: NF11636_high_9
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 13271120 - 13270694
Alignment:
| Q |
19 |
gatgggaggatttgagatgttcagcgaatatactgatgtccatcagagatcaatcatagagaatgtgaatcttttatatgtttctccaatggaatacagt |
118 |
Q |
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| T |
13271120 |
gatgggagcatttgagatgtcgagtgaatatactgatgtccatcagaggtcaatcatagagaatgtgaatcttttatatgtttctccaatggaatacagt |
13271021 |
T |
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| Q |
119 |
gactattcagttgatcaagttcacaaatcacaagatgctacaacatgtgttgatacatcttcgggtgcgaatggtccattaaatgatgttgagacaagta |
218 |
Q |
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| T |
13271020 |
gactattcagttgatcaagttcacaaatcacaagatgctacaacatgtgttgatacatcttcgggtgcgaaaggtccattaaatgatgttgagacaagta |
13270921 |
T |
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| Q |
219 |
atatcgatgctcacaaactggctgtcgcaggtaagttgatttgtttcgtgaaataatctatggtcatagtgtacatattagaaagatttctcaatctatt |
318 |
Q |
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| T |
13270920 |
atatcgatgctcacaaactggctgtcgcaggtaagttgatttgtttcgtgaaataatctatggtcatagtgtacatattagaaagatttctcaatctatt |
13270821 |
T |
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| Q |
319 |
aacattgttttttacaaatgagtttatcatattttctaaccttggatattttaggcactgctactacaagtgctgagtcttcacaaaagatgagtataag |
418 |
Q |
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| T |
13270820 |
aacattgttttatacaaatgagtttatcatattttctaaccttggatattttaggcactgctactacaagtgctgagtcttcaaaaaagatgagtataag |
13270721 |
T |
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| Q |
419 |
tccagcttcaggggaaataattggttc |
445 |
Q |
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| T |
13270720 |
tccagcttcaggggaaataattggttc |
13270694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 384
Target Start/End: Complemental strand, 13269326 - 13269183
Alignment:
| Q |
241 |
tgtcgcaggtaagttgatttgtttcgtgaaataatctatggtca-tagtgtacatattagaaagatttctcaatctattaacattgttttttacaaatga |
339 |
Q |
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| T |
13269326 |
tgtcacaggtatattgatttgtttcactaaataatttatggtcaatagtgtacacattagcaagatttcttaaccttttaacattgttttatagaaatga |
13269227 |
T |
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| Q |
340 |
gtttatcatattttctaaccttggatattttaggcactgctacta |
384 |
Q |
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| T |
13269226 |
gtttataat-cattctaaccttggatactttaggcactgctacta |
13269183 |
T |
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