View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_11 (Length: 434)
Name: NF11636_low_11
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 8946609 - 8947026
Alignment:
| Q |
1 |
atgataatatcaaagagtgtatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccatttaggaaaccacaatatgatattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946609 |
atgataatatcaaagagtgtatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccatttaggaaaccacaatatgatattc |
8946708 |
T |
|
| Q |
101 |
cagcatacactaacttattgatttcatatgccttagacttcattcaggtattctgttatacaaacatggattcatagagttttgaataagaatgttgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946709 |
cagcatacactaacttattgatttcatatgccttagacttcattcaggtattctgttatacaaacatggattcatagagttttgaataagaatgttgttt |
8946808 |
T |
|
| Q |
201 |
cttataacttcgttttctttgtccagtaatattagttattacctaaaataatgcaggaactttatggtttaggagctagaagaattggagtaattgggat |
300 |
Q |
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| T |
8946809 |
cttataacttcattttctttgtccagtaatattagttattacctaaaataatgcaggaactttatggtttaggagctagaagaattggagtaattggcat |
8946908 |
T |
|
| Q |
301 |
gccatatatagggtgtgttccctcacagagaacaattggaggaggaatgtatagatactgttcaggtttagaaaacgaagctgcaatagtcttcaactcc |
400 |
Q |
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| T |
8946909 |
gccatatatagggtgtgttccctcacagagaacaattggaggaggaatgtatagacactgttcaggtttagaaaacgaagctgcaatagtcttcaactcc |
8947008 |
T |
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| Q |
401 |
aaactagtatctcaaatg |
418 |
Q |
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| T |
8947009 |
aaactagtatctcaaatg |
8947026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 254 - 418
Target Start/End: Original strand, 8939329 - 8939493
Alignment:
| Q |
254 |
caggaactttatggtttaggagctagaagaattggagtaattgggatgccatatatagggtgtgttccctcacagagaacaattggaggaggaatgtata |
353 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || | | |
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| T |
8939329 |
caggaactatatggtttaggagctagaaggattggagtaattggtatgccaaatatagggtgtgtgccctcacagagaacaattggaggaggcattgaaa |
8939428 |
T |
|
| Q |
354 |
gatactgttcaggtttagaaaacgaagctgcaatagtcttcaactccaaactagtatctcaaatg |
418 |
Q |
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|| ||||||| ||| |||||| |||| |||| | |||||||||||||| |||||||| ||||| |
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| T |
8939429 |
gaggatgttcagattttgaaaaccaagcagcaagactcttcaactccaaattagtatctaaaatg |
8939493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 8938251 - 8938418
Alignment:
| Q |
1 |
atgataatatcaaagagtgtatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccatttaggaaaccacaatatgatattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| | | |||||||||| |
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| T |
8938251 |
atgataatatcaaagagtgtatacattatttgcataggaagtaatgacattgccaatacttatgctcaaacaccatataggagagtgaagtatgatattc |
8938350 |
T |
|
| Q |
101 |
cagcatacactaacttattgatttcatatgccttagacttcattcaggta--ttctgttatacaaaca |
166 |
Q |
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|
| T |
8938351 |
gatcatacacagacttattggcttcatatgcctcaaacttcttgcaagtatgttctgttatacaaaca |
8938418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 31796786 - 31796710
Alignment:
| Q |
2 |
tgataatatcaaagagtgtatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccattt |
78 |
Q |
| |
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||||| |||||||||| ||||||| | |||||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
31796786 |
tgatagtatcaaagagcatatacatagtgtgcataggaagtgatgacattgctaatacttatgctcaaacaccattt |
31796710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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