View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_12 (Length: 402)
Name: NF11636_low_12
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_12 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 100754 - 101124
Alignment:
| Q |
13 |
gagatttgaactcgagattatgaaaattaaattggatcatattattctcccttgctaaccttttggacaaaatttgtcacgcgataaaatcttatcaata |
112 |
Q |
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| T |
100754 |
gagatttgaactcgagattaagaaaattaaattggatcatattactctcccttgctaaccttttggacaaaatttgccacgcaataaaatcttatcaata |
100853 |
T |
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| Q |
113 |
attgttgatcatcgatcatttgaactctataaattgtgtatgtataatgcagcggtaagaaagattaagacaaattagttaaaagtatatgtgaatttag |
212 |
Q |
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| T |
100854 |
attgttgatcatcgatcatttgaactctataaattgtgtatgtataatgcagcggtaagaaagattaagacaaattagttaagagtatatgtgaatttag |
100953 |
T |
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| Q |
213 |
attatttatcgttagagattccacacatttatcattggatcgagatccaacttctccaactttgagctcaatagatcaactttcaaataaactcaaaatt |
312 |
Q |
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| T |
100954 |
attatttatcgttagagattccacacatttatcattggatcgagatccaacttctccaactttgagctcaatagatcaactttcaaataaactcaaaatt |
101053 |
T |
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| Q |
313 |
gaaaccaatctattttaatgaaatgactatgtgctgattgtgtagtctcctcttgaagggaatgtgtatta |
383 |
Q |
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| T |
101054 |
gaaaccaatctatcttaatgaaatgactatgtgctgattgtgtagtctcctcttgaagggaatgtgtatta |
101124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 41122395 - 41122025
Alignment:
| Q |
13 |
gagatttgaactcgagattatgaaaattaaattggatcatattattctcccttgctaaccttttggacaaaatttgtcacgcgataaaatcttatcaata |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
41122395 |
gagatttgaactcgagattaagaaaattaaattggatcatattactctcccttgctaaccttttggacaaaatttgccacgcaataaaatcttatcaata |
41122296 |
T |
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| Q |
113 |
attgttgatcatcgatcatttgaactctataaattgtgtatgtataatgcagcggtaagaaagattaagacaaattagttaaaagtatatgtgaatttag |
212 |
Q |
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| T |
41122295 |
attgttgatcatcgatcatttgaactctataaattgtgtatgtataatgcagcggtaagaaagattaagacaaattagttaagagtatatgtgaatttag |
41122196 |
T |
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| Q |
213 |
attatttatcgttagagattccacacatttatcattggatcgagatccaacttctccaactttgagctcaatagatcaactttcaaataaactcaaaatt |
312 |
Q |
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| T |
41122195 |
attatttatcgttagagattccacacatttatcattggatcgagatccaacttctccaactttgagctcaatagatcaactttcaaataaactcaaaatt |
41122096 |
T |
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| Q |
313 |
gaaaccaatctattttaatgaaatgactatgtgctgattgtgtagtctcctcttgaagggaatgtgtatta |
383 |
Q |
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| T |
41122095 |
gaaaccaatctatcttaatgaaatgactatgtgctgattgtgtagtctcctcttgaagggaatgtgtatta |
41122025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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