View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_13 (Length: 399)
Name: NF11636_low_13
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_13 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 4113 - 3725
Alignment:
| Q |
1 |
cttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatggtaggtagaagcccacaacaaggggttttccttc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4113 |
cttttttgctttctttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatggtaggtagaagcccacaacaaggggttttccttc |
4014 |
T |
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| Q |
101 |
tcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013 |
tcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaa |
3914 |
T |
|
| Q |
201 |
accattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaaataagtaaaaactataactaacaaataactattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3913 |
accattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaataagtaaaaacta----taacaaataactattt |
3818 |
T |
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| Q |
301 |
ctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttcttctcac |
393 |
Q |
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| T |
3817 |
ctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattccttcttttcac |
3725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 21447423 - 21447811
Alignment:
| Q |
1 |
cttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatggtaggtagaagcccacaacaaggggttttccttc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447423 |
cttttttgctttctttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatggtaggtagaagcccacaacaaggggttttccttc |
21447522 |
T |
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| Q |
101 |
tcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447523 |
tcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaa |
21447622 |
T |
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| Q |
201 |
accattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaaataagtaaaaactataactaacaaataactattt |
300 |
Q |
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| T |
21447623 |
accattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaataagtaaaaacta----taacaaataactattt |
21447718 |
T |
|
| Q |
301 |
ctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttcttctcac |
393 |
Q |
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| T |
21447719 |
ctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattccttcttttcac |
21447811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 40685194 - 40685001
Alignment:
| Q |
1 |
cttttttgctttccttttggccttcgcttcagcaacagcaaccggatccaaacactcgcctgcatggtaggtagaagcccacaacaaggggttttccttc |
100 |
Q |
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|||||| ||| ||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
40685194 |
ctttttcgctctcctttttgcctttgcttctgcaacagcaacaggatccaagcactcgcctgcatggtaggtagaggcccataacaaggggttttccttt |
40685095 |
T |
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| Q |
101 |
tcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgctaccctgaagtgaagatataaata |
194 |
Q |
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| T |
40685094 |
tcattagcaaaacctctcatcatgtgcctaatggaatcagttgatacaactgttgtgattcccagccgacttccctgaagtaaagatataaata |
40685001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 40684848 - 40684774
Alignment:
| Q |
312 |
tataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttc |
386 |
Q |
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|||||||| | ||||||||| || ||||| ||||| || ||||| ||||| || |||||||||||||||| |||| |
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| T |
40684848 |
tataccagcaatgcagacaatgtggatttcccacaaccactagttccacacaaaagcactgtcacagattccttc |
40684774 |
T |
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