View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_15 (Length: 389)
Name: NF11636_low_15
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_15 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 21447088 - 21447452
Alignment:
| Q |
19 |
agtggattggaaaaaacagcaatatatatattgacatcaatacggnnnnnnnntaatggacatgtaatcaagttttgacatacaacaaagttgagactca |
118 |
Q |
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| T |
21447088 |
agtggattggaaaaaacagcaatatatatattgacatcaatgcggaaaaaaaataatggacatgtaatcaagttttgacatacaacaaagttgagactca |
21447187 |
T |
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| Q |
119 |
agtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatctcactctgcgccttatatcc |
218 |
Q |
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| T |
21447188 |
agtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatctcactctgcgccttatatcc |
21447287 |
T |
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| Q |
219 |
ttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgct |
318 |
Q |
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| T |
21447288 |
ttcaatagccatttgttttggacttggatgctcagtagcacaagagccagtctctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgat |
21447387 |
T |
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| Q |
319 |
tcatccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggcctttgcttc |
383 |
Q |
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| T |
21447388 |
tcatccttgggaagtgattgtgacacaccagccatcttttttgctttctttttggccttcgcttc |
21447452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 99 - 383
Target Start/End: Complemental strand, 4368 - 4084
Alignment:
| Q |
99 |
tacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatc |
198 |
Q |
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| T |
4368 |
tacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatc |
4269 |
T |
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| Q |
199 |
tcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtccgtgtatcaggtttgctag |
298 |
Q |
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| T |
4268 |
tcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagccagtctctgatgtccgtgtatcaggtttgctag |
4169 |
T |
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| Q |
299 |
aattctgaccatcagttgcttcatccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggcctttgcttc |
383 |
Q |
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| T |
4168 |
aattctgaccatcagttgattcatccttgggaagtgattgtgacacaccagccatcttttttgctttctttttggccttcgcttc |
4084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 95 - 384
Target Start/End: Complemental strand, 40685453 - 40685164
Alignment:
| Q |
95 |
gacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcac |
194 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
40685453 |
gacatacaacaaagttgagactcaagtgaacaccctcaacaacaacggactctttccgttcttcccatgaagtgattagcctatctaggctgtcaatcac |
40685354 |
T |
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| Q |
195 |
catctcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtccgtgtatcaggtttg |
294 |
Q |
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| T |
40685353 |
catttcactctgggccttgaatccttcaacagccatttgttttgaattcaaccgttcagtcgcaccacagcccgcctccaatgtatgtatatcaaatttg |
40685254 |
T |
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| Q |
295 |
ctagaattctgaccatcagttgcttcatccttgggaagtgattgtgacacaccagccatcttttttgctttccttttggcctttgcttct |
384 |
Q |
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| T |
40685253 |
ctagaggtgtgaccttcagttacttcatccttaggtagtgactgtgatacaccagccatctttttcgctctcctttttgcctttgcttct |
40685164 |
T |
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