View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_16 (Length: 385)
Name: NF11636_low_16
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 34177119 - 34176750
Alignment:
| Q |
1 |
atgatcaatttcacagataacatttgtttccaacaataccaacatgatcaaaagatcaaactaccatactcataaattcctttgatnnnnnnn-ccaccc |
99 |
Q |
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| T |
34177119 |
atgatcaatttcacagataacatttgtttccaacaataccaacatgatcaaaagatcaaactaccatactcataaattcctttgataaaaaaaaccaccc |
34177020 |
T |
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| Q |
100 |
aataaagaacaaaacttcaaaacatggtaaaggtgaagatgaagtagctacctctaagtaccttgtttcttgttccaaccttttaagctcagcatgtatt |
199 |
Q |
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| T |
34177019 |
agtaaagaacaaaacttgaaaacatggtaaaggtgaagatgaagtagctacctctaagtaccttgtttcttgttccaaccttttaagctcagcatgtatt |
34176920 |
T |
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| Q |
200 |
ctatgttttcctcttgtatctgaagaagaaagagactgagactgaacccgctgatgggtgatgtgggtctcggattcggacccatccgattgcattttct |
299 |
Q |
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| T |
34176919 |
ctatgttttcctcttgtatctgaagaagaaagagactgagactgaacccgctgatgggtgatgtgggtctcggattcggacccatccgattgcattttgt |
34176820 |
T |
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| Q |
300 |
gatgc----taagatggtaacaatgaagaaacnnnnnnnnctagcttgatgaatttcaaagtctaagaaat |
366 |
Q |
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| T |
34176819 |
gatgctaattaagatggtaacaatgaagaaac-aaaaaaactagcttgatgaatttcaaagtctatgaaat |
34176750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 34147652 - 34147500
Alignment:
| Q |
103 |
aaagaacaaaacttcaaaacatggtaaaggtgaagatgaagtag------ctacctctaagtaccttgtttcttgttccaaccttttaagctcagcatgt |
196 |
Q |
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| T |
34147652 |
aaagaacaaaactagaaaacatggtaaagatgaagaagaagtagaagtaccaacctctaggtaccttgtttcttgttccaaccgtttaagttcagcatgt |
34147553 |
T |
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| Q |
197 |
attctatgttttcctcttgtatctgaagaa---gaaagagactgagactgaac |
246 |
Q |
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| T |
34147552 |
atcctatgtttccctcttgtatctgaagaagttgaaaaagactgagactgaac |
34147500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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