View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11636_low_18 (Length: 356)

Name: NF11636_low_18
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11636_low_18
NF11636_low_18
[»] chr2 (19 HSPs)
chr2 (25-339)||(8403626-8403940)
chr2 (144-334)||(8429486-8429676)
chr2 (228-332)||(8376193-8376297)
chr2 (109-188)||(8368104-8368183)
chr2 (109-188)||(8401227-8401306)
chr2 (109-188)||(8422804-8422883)
chr2 (120-174)||(8411867-8411921)
chr2 (120-174)||(8433965-8434019)
chr2 (122-174)||(8376087-8376139)
chr2 (228-332)||(8395879-8395983)
chr2 (228-332)||(8405589-8405693)
chr2 (122-174)||(8431018-8431070)
chr2 (228-303)||(8430889-8430964)
chr2 (106-165)||(8459649-8459708)
chr2 (121-170)||(8416952-8417001)
chr2 (228-332)||(8411709-8411813)
chr2 (228-332)||(8433807-8433911)
chr2 (228-303)||(8416822-8416897)
chr2 (124-174)||(8405747-8405797)
[»] chr4 (2 HSPs)
chr4 (129-302)||(55335978-55336151)
chr4 (128-332)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (228-332)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 25 - 339
Target Start/End: Complemental strand, 8403940 - 8403626
Alignment:
Q  25 ttgttaacaggaattgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgtta 124  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403940 ttgttaacaggaattgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgtta 8403841  T
Q  125 atacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactat 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  8403840 atacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattat 8403741  T
Q  225 tgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcc 324  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8403740 tgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcc 8403641  T
Q  325 tcaaaatctgatgtc 339  Q
    |||||||||||||||    
T  8403640 tcaaaatctgatgtc 8403626  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 8429676 - 8429486
Alignment:
Q  144 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat 243  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat 8429577  T
Q  244 aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctg 334  Q
    ||||||||||| || || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||  ||||||| |||||||    
T  8429576 aaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctg 8429486  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || |||||||||    
T  8376193 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca 8376292  T
Q  328 aaatc 332  Q
    |||||    
T  8376293 aaatc 8376297  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  109 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 188  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  109 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 188  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  109 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 188  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  120 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 174  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  120 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 174  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  122 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 174  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8395879 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 8395978  T
Q  328 aaatc 332  Q
    |||||    
T  8395979 aaatc 8395983  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8405693 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca 8405594  T
Q  328 aaatc 332  Q
    |||||    
T  8405593 aaatc 8405589  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  122 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 174  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 303  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| |||||||    
T  8430964 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta 8430889  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  106 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 165  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  121 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 170  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8411813 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8411714  T
Q  328 aaatc 332  Q
    |||||    
T  8411713 aaatc 8411709  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8433911 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8433812  T
Q  328 aaatc 332  Q
    |||||    
T  8433811 aaatc 8433807  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 303  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| ||||    
T  8416897 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta 8416822  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  124 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 174  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 129 - 302
Target Start/End: Complemental strand, 55336151 - 55335978
Alignment:
Q  129 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa 228  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | |||||   |||||   ||  ||||     
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag 55336052  T
Q  229 gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt 302  Q
    |||||||||||| | |||||||||||||||||| | ||||| ||||| || ||||||   || |||||||||||    
T  55336051 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt 55335978  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 128 - 332
Target Start/End: Complemental strand, 55330720 - 55330516
Alignment:
Q  128 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga 227  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| |||||  ||||  | ||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 55330621  T
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |  ||||||||||| ||| | ||||| ||||| || || |||   |||||||||| |||    ||||||||||||||||| |||    
T  55330620 agagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttca 55330521  T
Q  328 aaatc 332  Q
    |||||    
T  55330520 aaatc 55330516  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 25 - 129
Alignment:
Q  228 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 327  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  25 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 124  T
Q  328 aaatc 332  Q
    |||||    
T  125 aaatc 129  T

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