View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11636_low_19 (Length: 320)

Name: NF11636_low_19
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11636_low_19
NF11636_low_19
[»] chr4 (6 HSPs)
chr4 (16-320)||(30768857-30769161)
chr4 (119-195)||(29195095-29195171)
chr4 (132-195)||(5795422-5795485)
chr4 (119-183)||(46295109-46295174)
chr4 (119-170)||(32992637-32992689)
chr4 (139-183)||(39030133-39030177)
[»] chr8 (5 HSPs)
chr8 (132-197)||(26688863-26688928)
chr8 (132-195)||(11793534-11793597)
chr8 (132-195)||(11979252-11979315)
chr8 (145-195)||(22268959-22269009)
chr8 (119-195)||(968362-968439)
[»] chr7 (9 HSPs)
chr7 (119-195)||(22760863-22760940)
chr7 (132-195)||(7801180-7801243)
chr7 (145-195)||(48125200-48125250)
chr7 (132-195)||(5273603-5273666)
chr7 (132-195)||(5579247-5579310)
chr7 (140-178)||(46279031-46279069)
chr7 (132-177)||(3968655-3968700)
chr7 (132-197)||(31835190-31835255)
chr7 (237-284)||(654705-654750)
[»] chr5 (5 HSPs)
chr5 (119-195)||(16773807-16773884)
chr5 (140-196)||(19373238-19373294)
chr5 (119-183)||(1410659-1410723)
chr5 (236-268)||(37397806-37397838)
chr5 (237-269)||(39229207-39229239)
[»] chr1 (8 HSPs)
chr1 (145-196)||(952510-952561)
chr1 (132-183)||(4824983-4825034)
chr1 (140-195)||(37046985-37047040)
chr1 (147-195)||(34228874-34228922)
chr1 (140-195)||(15581162-15581217)
chr1 (150-195)||(1690108-1690153)
chr1 (132-196)||(19940885-19940949)
chr1 (140-196)||(24857851-24857907)
[»] chr2 (4 HSPs)
chr2 (119-177)||(30359672-30359730)
chr2 (145-195)||(32106566-32106616)
chr2 (120-195)||(12994376-12994452)
chr2 (237-284)||(28669025-28669070)
[»] chr3 (5 HSPs)
chr3 (135-195)||(3054994-3055054)
chr3 (140-194)||(18316519-18316573)
chr3 (140-193)||(42799768-42799821)
chr3 (119-170)||(16900680-16900732)
chr3 (119-195)||(42430335-42430409)
[»] chr6 (2 HSPs)
chr6 (119-197)||(28028528-28028606)
chr6 (119-195)||(33549104-33549181)
[»] scaffold0258 (1 HSPs)
scaffold0258 (119-196)||(15322-15400)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 30769161 - 30768857
Alignment:
Q  16 aacctgtgagaaaacaatcaaacaaacccttagaagaagaaaattaagcataaaagtacttggagtataaaataaacctgtgagaaaaaatcaaacaaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769161 aacctgtgagaaaacaatcaaacaaacccttagaagaagaaaattaagcataaaagtacttggagtataaaataaacctgtgagaaaaaatcaaacaaac 30769062  T
Q  116 cctagaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttgagcacaaattaatctacgt 215  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30769061 cctagaatcgaactgcgaccttgatgagaagtacactccaaggtcccaagtcaactccacctgaccaattcaagtgggttgagcacaaattaatctacgt 30768962  T
Q  216 cccatattataacnnnnnnnaaaaactcggtatccgatctaaaaaccgactaatatccgaggggaccaactccattatccactagcagagatccatttaa 315  Q
    |||||||||||||       ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  30768961 cccatattataactttttttaaaaactcggtatccgaccaaaaaatcgactaatatccggggggaccaactccattatccactagcagatatccatttaa 30768862  T
Q  316 agcca 320  Q
    |||||    
T  30768861 agcca 30768857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 29195171 - 29195095
Alignment:
Q  119 agaatcgaact-gcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  29195171 agaatcgaacttgcgaccttga-gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 29195095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 5795422 - 5795485
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||| ||| |||| |||||||||| |||||||||| ||||||||||||  ||||||||||    
T  5795422 gaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaacccaagtgggtt 5795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 46295174 - 46295109
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaa 183  Q
    |||||||||| || |||||||| ||| |||||||||||| |||||||| |||| | ||||||||||    
T  46295174 agaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaa 46295109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 32992689 - 32992637
Alignment:
Q  119 agaatcgaact-gcgaccttgaagagaagcacactccaaggtcccaagtcaac 170  Q
    ||||||||||| | |||||||| ||| ||||||||||||||||||||| ||||    
T  32992689 agaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaac 32992637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 39030133 - 39030177
Alignment:
Q  139 aagagaagcacactccaaggtcccaagtcaactccaccagaccaa 183  Q
    ||||| ||||||||||||||||||||| |||| ||||||| ||||    
T  39030133 aagaggagcacactccaaggtcccaagccaacaccaccaggccaa 39030177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 26688928 - 26688863
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttga 197  Q
    |||||||| ||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||||    
T  26688928 gaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttga 26688863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 11793534 - 11793597
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||| ||| |||||||||||||||||||||  ||| |||| |||||||  ||||||||||    
T  11793534 gaccttgaggaggagcacactccaaggtcccaagcgaacaccacaagaccaacccaagtgggtt 11793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 11979315 - 11979252
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    ||||||||  ||||||||||| ||||||||||||||||| || ||| |||||  ||||||||||    
T  11979315 gaccttgagaagaagcacacttcaaggtcccaagtcaacaccgccaaaccaacccaagtgggtt 11979252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 22268959 - 22269009
Alignment:
Q  145 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  22268959 agcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 22269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 968439 - 968362
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||| || ||||| || ||| |||||||||| |||||||||| |||  ||||||| |||| |||||||||||    
T  968439 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 22760940 - 22760863
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||| || |||||||| ||| |||||||||| ||||||||||||||  ||||||||||||  ||||||||||    
T  22760940 agaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 7801243 - 7801180
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||||| |||||||||| ||||||||||||||  ||||||| ||||  ||||||||||    
T  7801243 gaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 48125200 - 48125250
Alignment:
Q  145 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    ||||||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  48125200 agcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 48125250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 5273603 - 5273666
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||| ||| ||||||||| ||||||||||| |||| ||||||| ||||  ||||||||||    
T  5273603 gaccttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 5579247 - 5579310
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||| ||| ||||||||||||||||||||| |||| |||||||  |||  ||||||||||    
T  5579247 gaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgggtt 5579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 46279069 - 46279031
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccag 178  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  46279069 agaggagcacactccaaggtccaaagtcaactccaccag 46279031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 3968655 - 3968700
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccacca 177  Q
    |||||||| ||| ||||||||| |||||||||||||||| ||||||    
T  3968655 gaccttgaggaggagcacactcgaaggtcccaagtcaacaccacca 3968700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 31835255 - 31835190
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttga 197  Q
    |||||||| ||| |||||||||||||  |||||| |||| ||||||| ||||  ||||||||||||    
T  31835255 gaccttgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggttga 31835190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 654705 - 654750
Alignment:
Q  237 aaaactcggtatccgatctaaaaaccgactaatatccgaggggaccaa 284  Q
    |||||||||||||||||| || |||||||||  |||||||||||||||    
T  654705 aaaactcggtatccgatccaagaaccgacta--atccgaggggaccaa 654750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 16773884 - 16773807
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||| || ||||| || ||| |||||||||| ||||||||||||||  |||||||||||| |||||||||||    
T  16773884 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 19373294 - 19373238
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 196  Q
    |||| |||||||||||||||| |||| |||| ||||||| |||| ||||||||||||    
T  19373294 agagtagcacactccaaggtctcaagccaacaccaccaggccaactcaagtgggttg 19373238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 1410659 - 1410723
Alignment:
Q  119 agaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaa 183  Q
    |||||||||||| ||||| || ||| |||||||||| |  |||||||||||  ||||||||||||    
T  1410659 agaatcgaactgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaa 1410723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 37397838 - 37397806
Alignment:
Q  236 aaaaactcggtatccgatctaaaaaccgactaa 268  Q
    ||||||||||||||||||||||||| |||||||    
T  37397838 aaaaactcggtatccgatctaaaaatcgactaa 37397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 39229207 - 39229239
Alignment:
Q  237 aaaactcggtatccgatctaaaaaccgactaat 269  Q
    |||||||| ||||||||||||||||||||||||    
T  39229207 aaaactcgatatccgatctaaaaaccgactaat 39229239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 952561 - 952510
Alignment:
Q  145 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 196  Q
    |||||||||| |||||||||| |||| |||||||||||| ||||||||||||    
T  952561 agcacactcccaggtcccaagccaacaccaccagaccaactcaagtgggttg 952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 4825034 - 4824983
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaa 183  Q
    |||||||||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  4825034 gaccttgaagaggagcacactccaaggtcccaagccaacaccatcagaccaa 4824983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 37047040 - 37046985
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||  ||||||||||    
T  37047040 agaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 37046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 34228922 - 34228874
Alignment:
Q  147 cacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||| |||||||||| |||| |||||||||||| |||||||||||    
T  34228922 cacactccgaggtcccaagccaacaccaccagaccaactcaagtgggtt 34228874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 15581162 - 15581217
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  15581162 agaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 15581217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 1690108 - 1690153
Alignment:
Q  150 actccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    ||||| |||||||||| |||  ||||||||||||||||||||||||    
T  1690108 actcccaggtcccaagccaataccaccagaccaattcaagtgggtt 1690153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 19940885 - 19940949
Alignment:
Q  132 gaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 196  Q
    |||||| | ||| |||||||||||||| ||||||  ||| ||||||||||||  |||||||||||    
T  19940885 gaccttaaggaggagcacactccaaggacccaagctaacaccaccagaccaacccaagtgggttg 19940949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 24857851 - 24857907
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 196  Q
    |||||||| |||||||||||||| || |||| ||||||| ||||  |||||||||||    
T  24857851 agagaagcccactccaaggtccctagccaacaccaccaggccaacccaagtgggttg 24857907  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 30359730 - 30359672
Alignment:
Q  119 agaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccacca 177  Q
    ||||||||| || |||||||| ||| ||||||||||||||||||||| |||| ||||||    
T  30359730 agaatcgaaatgagaccttgaggaggagcacactccaaggtcccaagccaacaccacca 30359672  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 32106616 - 32106566
Alignment:
Q  145 agcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||||||||||||||||||| ||||||| ||||  ||||||||||    
T  32106616 agcacactccaaggtcccaagtcaacaccaccaggccaacccaagtgggtt 32106566  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 12994376 - 12994452
Alignment:
Q  120 gaatcgaact-gcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||| | |||||| | ||| |||||||||| ||||||||||||||  |||| ||||||| ||||| |||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 28669070 - 28669025
Alignment:
Q  237 aaaactcggtatccgatctaaaaaccgactaatatccgaggggaccaa 284  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  28669070 aaaactcggtatccgatccaaaaatcgacta--atccgaggggaccaa 28669025  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 3055054 - 3054994
Alignment:
Q  135 cttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    ||||| ||||||||| ||||||||||||||| |||| ||||||| ||||  ||||||||||    
T  3055054 cttgaggagaagcacgctccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 3054994  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 18316519 - 18316573
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggt 194  Q
    |||| ||||||||||||||||||||| || | ||||||||||||  |||||||||    
T  18316519 agaggagcacactccaaggtcccaagccagcaccaccagaccaacccaagtgggt 18316573  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 42799768 - 42799821
Alignment:
Q  140 agagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtggg 193  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||||  ||||||||    
T  42799768 agaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtggg 42799821  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 16900680 - 16900732
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaac 170  Q
    |||||||||| || |||||||| ||| ||||||||||||||||||||| ||||    
T  16900680 agaatcgaacatgagaccttgacgaggagcacactccaaggtcccaagccaac 16900732  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 42430409 - 42430335
Alignment:
Q  119 agaatcgaactgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||||  |||||||| ||| ||||||||||||| |||||||||||  ||||||| ||||  ||||||||||    
T  42430409 agaatcgaactaagaccttga-gaggagcacactccaagatcccaagtcaataccaccag-ccaacccaagtgggtt 42430335  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 28028606 - 28028528
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttga 197  Q
    |||||||||| || |||||||| ||| ||| ||||| |||||||||||||||| ||||||| ||||  ||||||||||||    
T  28028606 agaatcgaacatgagaccttga-gaggagctcactcaaaggtcccaagtcaacaccaccaggccaacccaagtgggttga 28028528  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 33549181 - 33549104
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggtt 195  Q
    |||||||||| || ||||| || ||| |||||||||| |||||||||| |||  ||||||||||||  ||||||||||    
T  33549181 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 15322 - 15400
Alignment:
Q  119 agaatcgaac-tgcgaccttgaagagaagcacactccaaggtcccaagtcaactccaccagaccaattcaagtgggttg 196  Q
    |||||||||| || ||||| || ||| |||||||||| |||||||||| |||  ||||||||||||  |||||||||||    
T  15322 agaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttg 15400  T

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