View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_20 (Length: 319)
Name: NF11636_low_20
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 37669612 - 37669313
Alignment:
| Q |
16 |
caattttgattgtttatatttggaatttaccatttgtattggcataagctaatatataccgtaaaaacatgtaataaaagaaaaaacaatattgtttctt |
115 |
Q |
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| T |
37669612 |
caattttgattgtttatatttggaatttaccatttgtattggcataagctaatatataccgtaaaaacatgtaataaaagaaaaaacaatattgtttctt |
37669513 |
T |
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| Q |
116 |
ttaggtcatcatcacacttcatgctgatatcatccaggtacaatatccacgtggcaagagaatgtatttttggtcttggaccaattgaaatgtggtgacc |
215 |
Q |
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| T |
37669512 |
ttaggtcatcatcacacttcatgctgatatcatccaggtacaatatccacgtggcaagagaatgtatttttggtcttggaccaattgaaatgtggtgacc |
37669413 |
T |
|
| Q |
216 |
gtcctcttggtgtatacctacatacatatgcttcatcataattataagcaattatcataggatttttagatttaaatacaagaactttttcttctctctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
37669412 |
gtcctcttggtgtatacctacatacatatgcttcatcataattataagcaattatcataggatttttagatttaaatacaagaactttttgttttctctc |
37669313 |
T |
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