View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11636_low_21 (Length: 291)

Name: NF11636_low_21
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11636_low_21
NF11636_low_21
[»] chr1 (10 HSPs)
chr1 (11-119)||(46691162-46691269)
chr1 (183-234)||(46691047-46691098)
chr1 (11-71)||(47940687-47940746)
chr1 (12-50)||(28448009-28448047)
chr1 (14-71)||(4299511-4299567)
chr1 (14-71)||(36880627-36880683)
chr1 (14-71)||(50627130-50627186)
chr1 (12-65)||(51789594-51789646)
chr1 (19-71)||(14387131-14387182)
chr1 (12-72)||(51789710-51789769)
[»] chr4 (6 HSPs)
chr4 (14-71)||(3422545-3422601)
chr4 (11-71)||(20435256-20435315)
chr4 (13-71)||(47465100-47465157)
chr4 (12-65)||(42274489-42274541)
chr4 (13-65)||(21048703-21048754)
chr4 (19-71)||(42274609-42274660)
[»] chr3 (9 HSPs)
chr3 (15-71)||(26976958-26977013)
chr3 (12-71)||(12789603-12789661)
chr3 (13-71)||(4072390-4072447)
chr3 (19-65)||(12838199-12838244)
chr3 (13-71)||(36657549-36657606)
chr3 (14-71)||(36657432-36657488)
chr3 (14-71)||(37506242-37506298)
chr3 (14-71)||(38125295-38125351)
chr3 (78-118)||(38125299-38125338)
[»] chr2 (5 HSPs)
chr2 (14-71)||(34490455-34490511)
chr2 (19-65)||(2818788-2818833)
chr2 (14-71)||(1924097-1924153)
chr2 (15-43)||(7116370-7116398)
chr2 (19-71)||(22269726-22269777)
[»] chr6 (4 HSPs)
chr6 (13-65)||(13172572-13172623)
chr6 (14-71)||(11687142-11687198)
chr6 (19-71)||(7808613-7808664)
chr6 (19-71)||(11687259-11687310)
[»] chr8 (2 HSPs)
chr8 (12-43)||(35467168-35467199)
chr8 (12-64)||(24211275-24211326)
[»] chr5 (7 HSPs)
chr5 (12-71)||(15855840-15855898)
chr5 (12-71)||(35420609-35420667)
chr5 (12-71)||(35420728-35420786)
chr5 (13-71)||(20476429-20476486)
chr5 (14-71)||(16472954-16473010)
chr5 (19-71)||(15855959-15856010)
chr5 (19-71)||(16473071-16473122)
[»] chr7 (4 HSPs)
chr7 (14-71)||(38883220-38883276)
chr7 (19-71)||(35665732-35665783)
chr7 (19-71)||(38883337-38883388)
chr7 (78-118)||(39143826-39143865)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 46691269 - 46691162
Alignment:
Q  11 caaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaacgcatctagttaagaacgatacggaaaaacacctaatga 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||    
T  46691269 caaaggacaaaacttaggtacaattctttagatgtttttctgtatggtttttaactaaaaatgcatctagttaagaacgatac-gaaaaatacctaatga 46691171  T
Q  111 attgtaccc 119  Q
    |||||||||    
T  46691170 attgtaccc 46691162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 46691098 - 46691047
Alignment:
Q  183 gcattcttataagaaagtttggtatagaagatttcgttaagtgttattaacc 234  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46691098 gcattcttataagaaagtttggtataaaagatttcgttaagtgttattaacc 46691047  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 47940746 - 47940687
Alignment:
Q  11 caaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||||| |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  47940746 caaaggagaaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 47940687  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 28448047 - 28448009
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttc 50  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  28448047 aaaggataaaacttaggtacaattctttatatgtttttc 28448009  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 4299567 - 4299511
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  4299567 aggagaaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 4299511  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 36880683 - 36880627
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  36880683 aggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 36880627  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 50627130 - 50627186
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  50627130 aggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 50627186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 51789594 - 51789646
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaac 65  Q
    |||||| |||||||||||||||||| |||| || |||| |||||||||||||||    
T  51789594 aaaggagaaaacttaggtacaattccttaggtgatttt-cgtatggtttttaac 51789646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 14387182 - 14387131
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  14387182 aaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 14387131  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 51789769 - 51789710
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaac 72  Q
    |||||| |||||||||||||||||| ||| ||| |||| ||||||||| ||||| ||||||    
T  51789769 aaaggagaaaacttaggtacaattccttaaatgctttt-cgtatggttcttaactaaaaac 51789710  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 3422601 - 3422545
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  3422601 aggacaaaacttaggtacaattctttaggtgttttt-cgtatggtttttaactaaaaa 3422545  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 20435315 - 20435256
Alignment:
Q  11 caaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||||| ||||||||||||||||||||||| || |||| ||||||||| ||||| |||||    
T  20435315 caaaggagaaaacttaggtacaattctttaggtgctttt-cgtatggttcttaactaaaaa 20435256  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 47465157 - 47465100
Alignment:
Q  13 aaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||||||||||||||||||||||||||| || |||| | |||| |||||||| |||||    
T  47465157 aaggacaaaacttaggtacaattctttaggtgctttt-catatgatttttaactaaaaa 47465100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 42274489 - 42274541
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaac 65  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||||| |||||    
T  42274489 aaaggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaac 42274541  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 21048703 - 21048754
Alignment:
Q  13 aaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaac 65  Q
    ||||| |||||||||||||||||| ||||||| |||| ||||||||| |||||    
T  21048703 aaggagaaaacttaggtacaattcgttagatgctttt-cgtatggttcttaac 21048754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 42274660 - 42274609
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  42274660 aaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 42274609  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 26977013 - 26976958
Alignment:
Q  15 ggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  26977013 ggacaaaacttaggtacaattctttaggtgttttt-cgtatggtttttaactaaaaa 26976958  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 12789603 - 12789661
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||| |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  12789603 aaaggagaaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 12789661  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 4072447 - 4072390
Alignment:
Q  13 aaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||| |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  4072447 aaggagaaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 4072390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 12838244 - 12838199
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaac 65  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||||    
T  12838244 aaaacttatgtacaattctttaggtgttttt-cgtatggtttttaac 12838199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 36657606 - 36657549
Alignment:
Q  13 aaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  36657606 aaggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 36657549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 36657432 - 36657488
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  36657432 aggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 36657488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 37506298 - 37506242
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||||||||||| |||||||||||||| ||||||| ||| ||||| ||||| |||||    
T  37506298 aggacaaaacttatgtacaattctttaggtgttttt-cgtgtggttcttaactaaaaa 37506242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 38125351 - 38125295
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  38125351 aggagaaaacttaggtacaattcattaggtgttttt-cgtatggttcttaactaaaaa 38125295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 38125299 - 38125338
Alignment:
Q  78 tagttaagaacgatacggaaaaacacctaatgaattgtacc 118  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  38125299 tagttaagaaccatacg-aaaaacacctaatgaattgtacc 38125338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 34490455 - 34490511
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||    
T  34490455 aggagaaaacttaggtacaattctttaggtgttttt-cgtatggttcttaactaaaaa 34490511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 2818833 - 2818788
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaac 65  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  2818833 aaaacttaggtacaattctttaggtgttttt-cgtatggttcttaac 2818788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 1924153 - 1924097
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||    
T  1924153 aggagaaaacttaggtacaattccttaggtgttttt-cgtatggttcttaactaaaaa 1924097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 7116370 - 7116398
Alignment:
Q  15 ggacaaaacttaggtacaattctttagat 43  Q
    |||||||||||||||||||||||||||||    
T  7116370 ggacaaaacttaggtacaattctttagat 7116398  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 22269726 - 22269777
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| |||| ||||||| |||||| |||||||| |||||    
T  22269726 aaaacttaggtacaattccttaggtgttttt-cgtatgatttttaactaaaaa 22269777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 13172572 - 13172623
Alignment:
Q  13 aaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaac 65  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  13172572 aaggagaaaacttaggtacaattctctagatgttttt-cgtatggttcttaac 13172623  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 11687142 - 11687198
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  11687142 aggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 11687198  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7808613 - 7808664
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| |||| ||||||| ||| ||||||||||| |||||    
T  7808613 aaaacttaggtacaattccttaggtgttttt-cgtttggtttttaactaaaaa 7808664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 11687310 - 11687259
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  11687310 aaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 11687259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 35467168 - 35467199
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagat 43  Q
    ||||||||||||||||||||||||||||||||    
T  35467168 aaaggacaaaacttaggtacaattctttagat 35467199  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 24211275 - 24211326
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaa 64  Q
    |||||| ||||||||||||||||||||||| || |||| ||||||||| ||||    
T  24211275 aaaggagaaaacttaggtacaattctttaggtgctttt-cgtatggttcttaa 24211326  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 15855840 - 15855898
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  15855840 aaaggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 15855898  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 35420609 - 35420667
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  35420609 aaaggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 35420667  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 35420786 - 35420728
Alignment:
Q  12 aaaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  35420786 aaaggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 35420728  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 20476429 - 20476486
Alignment:
Q  13 aaggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    ||||| ||||||||||||||||||| |||||| |||| ||||||||| ||||| |||||    
T  20476429 aaggagaaaacttaggtacaattctctagatgctttt-cgtatggttcttaactaaaaa 20476486  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 16472954 - 16473010
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  16472954 aggaaaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 16473010  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 15856010 - 15855959
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  15856010 aaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 15855959  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 16473122 - 16473071
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  16473122 aaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 16473071  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 38883220 - 38883276
Alignment:
Q  14 aggacaaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  38883220 aggagaaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 38883276  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 35665783 - 35665732
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| |||| || |||| ||||||||||||||| |||||    
T  35665783 aaaacttaggtacaattccttaggtgctttt-cgtatggtttttaactaaaaa 35665732  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 38883388 - 38883337
Alignment:
Q  19 aaaacttaggtacaattctttagatgtttttccgtatggtttttaacgaaaaa 71  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||| |||||    
T  38883388 aaaacttaggtacaattccttagatgctttt-cgtatggttcttaactaaaaa 38883337  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 39143826 - 39143865
Alignment:
Q  78 tagttaagaacgatacggaaaaacacctaatgaattgtacc 118  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  39143826 tagttaagaaccatacg-aaaaacacctaatgaattgtacc 39143865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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