View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11636_low_23 (Length: 242)
Name: NF11636_low_23
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 4591806 - 4592022
Alignment:
| Q |
16 |
atacctacggtttggaaattcataggaattgtcgcagctgctttgctcgtggttctcaccatagtgcaaacatattactcatcccgcagtggctaatttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4591806 |
atacctacggtttggaaattcataggaattgtcgcagctgctttgctcgtggttctcaccatagtgcaaacatattactcatcccgcagtggctaatttg |
4591905 |
T |
|
| Q |
116 |
ttttcgtatcaatttgttattggaatataggagttttcatcaaaatatttcatttaataatctttgactcaaaatcaaagaattggaagaaatgtagaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4591906 |
ttttcgtatcaatttgttattggaatataggagttttcatcaaaatatttcatttaataatctttgactcaaaatcaaagaattggaagaaatgtagaat |
4592005 |
T |
|
| Q |
216 |
cgtatttattggtctct |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4592006 |
cgtatttattggtctct |
4592022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 4555489 - 4555667
Alignment:
| Q |
16 |
atacctacggtttggaaattcataggaattgtcgcagctgctttgctcgtggttctcaccatagtgcaaacatattactcatcccgcagtggctaatttg |
115 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||| || | ||||| | || || || || |||||||||||| ||| ||||| |||||||| |||| |
|
|
| T |
4555489 |
atacctacggtttggaa-ttcgtaggaataatcgcagttgttgtgctcctcgtccttactatcatgcaaacatattgctcctcccgtagtggctagtttg |
4555587 |
T |
|
| Q |
116 |
ttttcgtatcaatttgttattggaatataggagttttcatcaaaatatttcatttaataatctttgactcaaaatcaaag |
195 |
Q |
| |
|
|||| | |||| |||| ||||| |||||||| || | |||||||| || |||||| |||||||||||||| |||||||| |
|
|
| T |
4555588 |
ttttattctcaacttgtaattggcatataggatttctaatcaaaattttgcatttattaatctttgactcagaatcaaag |
4555667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 4621350 - 4621433
Alignment:
| Q |
28 |
tggaaattcataggaattgtcgcagctgctttgctcgtggttctcaccatagtgcaaacatattactcatcccgcagtggctaa |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |||| |||||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
4621350 |
tggaaattcataggaattgtggcagctgctatgctcctggtactcaccatcatgcagacatattactcatcccgcagtgactaa |
4621433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University