View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_6 (Length: 599)
Name: NF11636_low_6
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 8403648 - 8403091
Alignment:
| Q |
1 |
agcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttctt |
100 |
Q |
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| T |
8403648 |
agcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttgatttctt |
8403549 |
T |
|
| Q |
101 |
gtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagag |
200 |
Q |
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| T |
8403548 |
gtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagag |
8403449 |
T |
|
| Q |
201 |
aattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggccaccta |
300 |
Q |
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| T |
8403448 |
aattgtataatgtactcccatttttctcataataaatacaatgggtacgacaatgcttgatgaatatatataacaatgcttgatcaattttggccaccta |
8403349 |
T |
|
| Q |
301 |
gatggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaac--aa |
398 |
Q |
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| T |
8403348 |
gatggccagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattctccatgatatgaac-aaaatgatgtatcccctaattaacaaaa |
8403250 |
T |
|
| Q |
399 |
aaaatgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgac |
498 |
Q |
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| T |
8403249 |
aaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgac |
8403150 |
T |
|
| Q |
499 |
gataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa |
557 |
Q |
| |
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| T |
8403149 |
gataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa |
8403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 4 - 537
Target Start/End: Complemental strand, 8429500 - 8428991
Alignment:
| Q |
4 |
ttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtt |
103 |
Q |
| |
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||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||| |
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| T |
8429500 |
ttgcctcgaaatctgctctctatcggatggaaggacgtgagatagatgaattcgccaacaaactcttctgaaaacaacatttttttttt--------gtt |
8429409 |
T |
|
| Q |
104 |
tgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagagaat |
203 |
Q |
| |
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||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||| | |||| ||||||||| |
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| T |
8429408 |
tgattcattcttttcatacgaattctttcaattattttgaaaataaaacc----gttgaacgtttgaggagtaact---------------ttagagaat |
8429328 |
T |
|
| Q |
204 |
tgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggccacctagat |
303 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||| |||||| | |||||||| ||| ||| | || |||||||||| |||||||||||||||| |
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| T |
8429327 |
tgtataatgtactcccatttttcttatagtaaatacaacgggtacgataatgcttgtggaaaataca--acgatgcttgatctgttttggccacctagat |
8429230 |
T |
|
| Q |
304 |
-----ggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaacaa |
398 |
Q |
| |
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|| || ||||||||||||||| ||| ||||||||||| ||| ||||||| | |||||| |||| |||||| | || ||||| |||||| || | |
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| T |
8429229 |
taggtggtcacattgaaccaagtgttaggcattgacacaacctggatagggaaacactctccaggata---acaaaa-tcatttatcccctaattgacga |
8429134 |
T |
|
| Q |
399 |
aaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgt |
494 |
Q |
| |
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|||||| |||||||| |||||||||||| |||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||| ||| | |
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| T |
8429133 |
aaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaatgccaatct |
8429034 |
T |
|
| Q |
495 |
tgacgataaacattatattttgcctgcattgcaatttgagaat |
537 |
Q |
| |
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||| ||| |||||| |||||| ||||||||| ||||||| |
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| T |
8429033 |
cgacattaaccattatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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