View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11636_low_7 (Length: 561)

Name: NF11636_low_7
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11636_low_7
NF11636_low_7
[»] chr5 (2 HSPs)
chr5 (234-546)||(14744060-14744382)
chr5 (394-427)||(7384738-7384771)
[»] scaffold0045 (1 HSPs)
scaffold0045 (22-158)||(30065-30202)
[»] chr7 (3 HSPs)
chr7 (394-433)||(21088826-21088865)
chr7 (22-99)||(5172852-5172929)
chr7 (20-56)||(40771218-40771254)
[»] chr4 (5 HSPs)
chr4 (394-433)||(54794976-54795015)
chr4 (20-93)||(13393762-13393835)
chr4 (20-93)||(13396901-13396974)
chr4 (394-433)||(18058941-18058980)
chr4 (20-93)||(42567732-42567805)
[»] chr3 (2 HSPs)
chr3 (20-158)||(29960942-29961081)
chr3 (20-158)||(30010147-30010286)
[»] chr2 (1 HSPs)
chr2 (20-158)||(39190089-39190228)
[»] chr1 (1 HSPs)
chr1 (20-158)||(41140854-41140993)
[»] scaffold0502 (1 HSPs)
scaffold0502 (20-99)||(4217-4296)
[»] chr8 (1 HSPs)
chr8 (117-158)||(44626201-44626242)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 234 - 546
Target Start/End: Complemental strand, 14744382 - 14744060
Alignment:
Q  234 tcatatagtgcttctccatgatctctagttcggattattcaaatacccaaaaggtaactaaccattcttgatctatctggtttaccaatatgtttcagta 333  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| | ||| |||| |||||||||||| |||||||||||||||||||| |||| |||    
T  14744382 tcatatagtgcttctccatgatctctagtttagattattcaaatacgcgaaaagtaagtaaccattcttggtctatctggtttaccaatatctttcggta 14744283  T
Q  334 tccatcctaaccaatgtatcaatttcaaannnnnnnaatataaattgagaatcgattctct----------ttgtaatttggaaatttgttttttccttt 423  Q
    ||| |||||||| ||||||||||||| ||       |||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  14744282 tccctcctaacctatgtatcaatttctaatttttttaatataaattgagaatcgattctctctttctttatttgtaatttggaaatttgttttttccttt 14744183  T
Q  424 aatttggaaagatccatgtctaattgttaaagacctcaacatattaaggaatataaggacttctattggattggatggatnnnnnnnggatatgttaatt 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||       |||||||||||||    
T  14744182 aatttggaaagatccatgtctaattgttaaagacctcaacatattaagaaatataaggacttctattgaattggatggataaaaaaaggatatgttaatt 14744083  T
Q  524 atcaactatacaataactctctg 546  Q
    |||||||||||||||||||||||    
T  14744082 atcaactatacaataactctctg 14744060  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 7384771 - 7384738
Alignment:
Q  394 tttgtaatttggaaatttgttttttcctttaatt 427  Q
    ||||||||| ||||||||||||||||||||||||    
T  7384771 tttgtaattcggaaatttgttttttcctttaatt 7384738  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 30065 - 30202
Alignment:
Q  22 tctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggattg-attgtttagtcatgtccgatga 120  Q
    |||||||||||||||| ||||||||||||| ||||   |||||   |||||  || ||||| ||||||||||||||| |   |||||  | |||| ||||    
T  30065 tctattgtgttaaacactaattagttgatgaatatgtgtgattgagctattctttctaaatggaccgtgatggattgaaccatttagctaagtccaatga 30164  T
Q  121 gaagtctctgccttcagctggttagctatttaaacgtc 158  Q
    || |||||| |||||||| | |||||||||||||||||    
T  30165 gaggtctctaccttcagccgtttagctatttaaacgtc 30202  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 433
Target Start/End: Original strand, 21088826 - 21088865
Alignment:
Q  394 tttgtaatttggaaatttgttttttcctttaatttggaaa 433  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  21088826 tttgtaattcggaaatttgttttttcctttaatttggaaa 21088865  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 5172852 - 5172929
Alignment:
Q  22 tctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggattga 99  Q
    |||||||| |||| || ||||||||||||| |||||  ||||| || ||||| || |||||||||| |||||| ||||    
T  5172852 tctattgtattaagcactaattagttgatgaatatatgtgattggattattgtttctaaattgaccatgatgggttga 5172929  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 40771218 - 40771254
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatat 56  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  40771218 ggtctattgtgttaaacactaattagttgatgaatat 40771254  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 433
Target Start/End: Complemental strand, 54795015 - 54794976
Alignment:
Q  394 tttgtaatttggaaatttgttttttcctttaatttggaaa 433  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  54795015 tttgtaattcggaaatttgttttttcctttaatttggaaa 54794976  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 13393835 - 13393762
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatg 93  Q
    ||||||||| |||||||| ||||||||||||| |||| | ||||||  |||||  |||||||| ||||||||||    
T  13393835 ggtctattgagttaaacactaattagttgatgaatatgcgtgattaagctattctttttaaatggaccgtgatg 13393762  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 13396974 - 13396901
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatg 93  Q
    ||||||||| |||||||| ||||||||||||| |||| | ||||||  |||||  |||||||| ||||||||||    
T  13396974 ggtctattgagttaaacactaattagttgatgaatatgcgtgattaagctattctttttaaatggaccgtgatg 13396901  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 433
Target Start/End: Original strand, 18058941 - 18058980
Alignment:
Q  394 tttgtaatttggaaatttgttttttcctttaatttggaaa 433  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  18058941 tttgtaattcagaaatttgttttttcctttaatttggaaa 18058980  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 42567805 - 42567732
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatg 93  Q
    ||||||||| ||||| |||||||||||||||| ||||   ||||| | |||||  |||||||| ||||||||||    
T  42567805 ggtctattgcgttaagcattaattagttgatgaatatgtctgattgggctattctttttaaatggaccgtgatg 42567732  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 29961081 - 29960942
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggatt-gattgtttagtcatgtccgat 118  Q
    ||||||||||||||| |||||||||||||||| ||||   ||||| |||||||  || ||||| ||||||||||| || ||   |||||  |   || ||    
T  29961081 ggtctattgtgttaagcattaattagttgatgaatatgtgtgattggactattctttctaaatggaccgtgatgggttggaccatttagctaaacccaat 29960982  T
Q  119 gagaagtctctgccttcagctggttagctatttaaacgtc 158  Q
    |||| ||||||||| ||||| | |||||||||||||||||    
T  29960981 gagaggtctctgccctcagccgtttagctatttaaacgtc 29960942  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 30010286 - 30010147
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggatt-gattgtttagtcatgtccgat 118  Q
    ||||||||||||||| |||||||||||||||| ||||   ||||| |||||||  || ||||| ||||||||||| || ||   |||||  |   || ||    
T  30010286 ggtctattgtgttaagcattaattagttgatgaatatgtgtgattggactattctttctaaatggaccgtgatgggttggaccatttagctaaacccaat 30010187  T
Q  119 gagaagtctctgccttcagctggttagctatttaaacgtc 158  Q
    |||| ||||||||| ||||| | |||||||||||||||||    
T  30010186 gagaggtctctgccctcagccgtttagctatttaaacgtc 30010147  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 39190089 - 39190228
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggatt-gattgtttagtcatgtccgat 118  Q
    |||||||||||||||||||||||||||||||| ||||   ||||| | |||||| |  ||||| ||||||||||| || ||   |||||  | |||| ||    
T  39190089 ggtctattgtgttaaacattaattagttgatgaatatgagtgattgggctattgttactaaatggaccgtgatgggttggaccatttagctaagtccaat 39190188  T
Q  119 gagaagtctctgccttcagctggttagctatttaaacgtc 158  Q
    |||| ||| ||||| ||||| | |||||||| ||||||||    
T  39190189 gagaggtccctgccctcagccgtttagctatgtaaacgtc 39190228  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 41140854 - 41140993
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggatt-gattgtttagtcatgtccgat 118  Q
    |||||||| |||||| |||||||||||||||| ||||  |||||| | |||||  |||||||| ||||||||||| || ||   |||||  | | | |||    
T  41140854 ggtctattatgttaagcattaattagttgatgaatatgtatgattggtctattctttttaaatggaccgtgatgggttggaccatttagctaagcctgat 41140953  T
Q  119 gagaagtctctgccttcagctggttagctatttaaacgtc 158  Q
    |||| ||| ||||| ||||| | |||||||||||||||||    
T  41140954 gagaggtccctgccctcagccgtttagctatttaaacgtc 41140993  T

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Target: scaffold0502 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 4217 - 4296
Alignment:
Q  20 ggtctattgtgttaaacattaattagttgatggatatacatgattagactattgcttttaaattgaccgtgatggattga 99  Q
    |||||||||||||||||| ||||||||| ||| ||||   ||||| |||||||  || ||||| ||||||||||| ||||    
T  4217 ggtctattgtgttaaacactaattagtttatgaatatgtgtgattggactattctttctaaatggaccgtgatgggttga 4296  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 44626201 - 44626242
Alignment:
Q  117 atgagaagtctctgccttcagctggttagctatttaaacgtc 158  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  44626201 atgagaggtctctgccttcagccgtttagctatttaaacgtc 44626242  T

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