View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11636_low_9 (Length: 484)
Name: NF11636_low_9
Description: NF11636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11636_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 207 - 421
Target Start/End: Original strand, 52051335 - 52051549
Alignment:
| Q |
207 |
atggatttccgtaaatatgtcagagacaagaaatgccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaa |
306 |
Q |
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| T |
52051335 |
atggatttccgtaaatatgtcagagacaagaaatgccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaa |
52051434 |
T |
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| Q |
307 |
aaatagcattggcatgcaccaccactgtaatcacaaccattagttcatatccatgtacagaagattctgtaacactatggtccctcaaataaatatacct |
406 |
Q |
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| T |
52051435 |
aaatagcattggcatgcaccaccactgtaatcacaaccattagttcatatccatgtacagaagattctgtaacactatggtccctcaaataaatatacct |
52051534 |
T |
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| Q |
407 |
attctaattctagta |
421 |
Q |
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||||||||||||||| |
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| T |
52051535 |
attctaattctagta |
52051549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 52051148 - 52051285
Alignment:
| Q |
20 |
aagtaaaggaacagaaaaagtaaaatgagttagtagcagtaaaagctcaaacccgtacaatcttacttctgatacagaggcattaccaactctcttcaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52051148 |
aagtaaaggaacagaaaaagtaaaatgagttagtagcagtaaaagctcaaacccgtacaatcttacttctgagacagaggcattaccaactctcttcaaa |
52051247 |
T |
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| Q |
120 |
tagtttcaatatacaatcaataatactaataataacta |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52051248 |
tagtttcaatatacaatcaataatactaataataacta |
52051285 |
T |
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