View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11637_low_1 (Length: 544)
Name: NF11637_low_1
Description: NF11637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11637_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 32937269 - 32937775
Alignment:
| Q |
17 |
aaaatggaaggttctggaacgtttactggatccgacggagatatttacagtggttcatggagttccgatagaaaaaacggttacggaaagaaacgttatg |
116 |
Q |
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| T |
32937269 |
aaaatggaaggttctggaacttttaccggatccgacggtgatatttacagtggttcatggagttccgatagaaaaaacggttacggaaagaaacgttatg |
32937368 |
T |
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| Q |
117 |
gtaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgtttggaaaaacgggaatgagtatattggtgaatggaa |
216 |
Q |
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| T |
32937369 |
ttaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgtttggaaaaacgggaatgagtatattggtgaatggaa |
32937468 |
T |
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| Q |
217 |
gaacggtgttattaacggaagaggaacgcttgtttggttgaatgggaatcgttacgaaggtgaatgggagaatggtgttcccaaagggcaaggtgtgttt |
316 |
Q |
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| T |
32937469 |
gaacggtgttattaacggaagaggaactcttgtttggttgaatgggaatcgttatgaaggtgaatgggagaatggtgttcccaaagggcaaggtgtgttt |
32937568 |
T |
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| Q |
317 |
acttggcctgatggaagttgctatgttgggaattggaataataatagtaataatgattttcaatcttctttattgaatgggagtttttatcctggtgatg |
416 |
Q |
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| T |
32937569 |
acttggcctgatggaagttgctatgttgggaattg---------taataataatgattttcaatcttctttattgaatgggagtttttatcctggtgatg |
32937659 |
T |
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| Q |
417 |
attttgctgtgacaatgaggaaaaggtgttttgttgaaggtggaaaggattttgggaagatttgtatttgggaatctgatggagaaaaaggtgatataac |
516 |
Q |
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| T |
32937660 |
attttgctgtgacaatgaggaaaaggtgttttgttgaaggtggaaaggattttgggaagatttgtatttgggaatctgatggagaaaaaggtgatataac |
32937759 |
T |
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| Q |
517 |
ttgtgatattgttgat |
532 |
Q |
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| T |
32937760 |
ttgtgatattgttgat |
32937775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 24523232 - 24523403
Alignment:
| Q |
43 |
tggatccgacggagatatttacagtggttcatggagttccgatagaaaaaacggttacggaaagaaacgttatggtaacggtgattattatgaaggttgg |
142 |
Q |
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| T |
24523232 |
tggatccgacggtgatacatatcgtgggtcatggagctccgatagaaaacacgggttcggtcagaaacgttacgcgaacggtgatttatacgaagggtgg |
24523331 |
T |
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| Q |
143 |
tggaagaagaatgttcaagaaggaaaagggaggtatgtttggaaaaacgggaatgagtatattggtgaatgg |
214 |
Q |
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| T |
24523332 |
tggaagcgtaacgttcaagatggtcaaggacgttacgtttggaagaatgggaatgagtatgttggtgaatgg |
24523403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 24523634 - 24523691
Alignment:
| Q |
475 |
gatttgtatttgggaatctgatggagaaaaaggtgatataacttgtgatattgttgat |
532 |
Q |
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| T |
24523634 |
gatttgtatttgggaatctgaaggtgaagctggtgatattacttgtgatattgttgat |
24523691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 39807734 - 39807601
Alignment:
| Q |
83 |
gatagaaaaaacggttacggaaagaaacgttatggtaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgttt |
182 |
Q |
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| T |
39807734 |
gatagaaaaaatgggttcggtgagaaacgttatagtaatggtgatgtgtatgaaggatggtggaggtgtaacttgcaagatggtgaaggaaggtatgtgt |
39807635 |
T |
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| Q |
183 |
ggaaaaacgggaatgagtatattggtgaatggaa |
216 |
Q |
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| T |
39807634 |
ggaaaaacgggaatgagtatgttggtgaatggaa |
39807601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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