View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11637_low_2 (Length: 364)
Name: NF11637_low_2
Description: NF11637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11637_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 1956778 - 1956853
Alignment:
| Q |
12 |
agagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaa |
87 |
Q |
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| T |
1956778 |
agagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatctaggtaaaaa |
1956853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 1941687 - 1941761
Alignment:
| Q |
12 |
agagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaa |
86 |
Q |
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| T |
1941687 |
agagaagaagataaagggttttgcaattagtgagacagcttttttaatcttccttctcatggcatctaggtaaaa |
1941761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 1927577 - 1927701
Alignment:
| Q |
12 |
agagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaaat-actaaaacttgttttgtttta |
110 |
Q |
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| T |
1927577 |
agagaagaagataaagggttttgcaataagtgaaacagcttttacaatatttcttctcatggcatctaggtaaaaaataaattacaattattttatttta |
1927676 |
T |
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| Q |
111 |
tttatgtttataccttcataatatt |
135 |
Q |
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| T |
1927677 |
ttgatgtttttaccttcataatatt |
1927701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 36774869 - 36774912
Alignment:
| Q |
290 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
333 |
Q |
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| T |
36774869 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
36774912 |
T |
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