View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11638_high_1 (Length: 606)

Name: NF11638_high_1
Description: NF11638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11638_high_1
NF11638_high_1
[»] chr2 (6 HSPs)
chr2 (203-588)||(30859953-30860337)
chr2 (1-95)||(30860499-30860594)
chr2 (15-95)||(30861599-30861680)
chr2 (272-377)||(25951016-25951123)
chr2 (327-427)||(8143505-8143606)
chr2 (329-424)||(5320159-5320247)
[»] chr1 (4 HSPs)
chr1 (277-420)||(13342720-13342865)
chr1 (272-377)||(17177198-17177305)
chr1 (272-351)||(43861647-43861727)
chr1 (272-389)||(42541360-42541479)
[»] chr3 (9 HSPs)
chr3 (329-425)||(50430075-50430172)
chr3 (324-425)||(49308933-49309035)
chr3 (272-365)||(31237742-31237836)
chr3 (288-377)||(37236184-37236275)
chr3 (238-377)||(1850895-1851035)
chr3 (329-427)||(12870738-12870835)
chr3 (324-363)||(52739942-52739981)
chr3 (329-398)||(6232631-6232701)
chr3 (329-377)||(19747400-19747449)
[»] chr6 (5 HSPs)
chr6 (272-430)||(7704133-7704293)
chr6 (272-377)||(6046572-6046679)
chr6 (272-377)||(12113328-12113435)
chr6 (365-411)||(35081572-35081618)
chr6 (327-427)||(8542063-8542164)
[»] chr8 (5 HSPs)
chr8 (327-425)||(3793920-3794019)
chr8 (274-339)||(5016856-5016922)
chr8 (293-377)||(38966046-38966132)
chr8 (308-377)||(15556954-15557025)
chr8 (287-351)||(21662276-21662341)
[»] chr5 (3 HSPs)
chr5 (316-425)||(7320625-7320736)
chr5 (293-377)||(24315807-24315893)
chr5 (293-377)||(24358140-24358226)
[»] chr4 (7 HSPs)
chr4 (272-377)||(3887762-3887869)
chr4 (272-372)||(32414660-32414762)
chr4 (329-424)||(5577179-5577275)
chr4 (272-351)||(12582756-12582836)
chr4 (316-425)||(28662391-28662502)
chr4 (324-426)||(32416589-32416692)
chr4 (293-351)||(47981749-47981808)
[»] chr7 (7 HSPs)
chr7 (329-427)||(37741420-37741519)
chr7 (274-377)||(21979892-21979997)
chr7 (293-377)||(13956475-13956561)
chr7 (329-425)||(35846415-35846512)
chr7 (308-422)||(36497876-36497992)
chr7 (365-425)||(41274533-41274593)
chr7 (316-361)||(33509948-33509994)
[»] scaffold0025 (1 HSPs)
scaffold0025 (329-425)||(47042-47139)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 203 - 588
Target Start/End: Complemental strand, 30860337 - 30859953
Alignment:
Q  203 aatattatgatcccaaatttcagtttttgttaagtaatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaa 302  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30860337 aatattatgatcctaaatttcagtttttgtttagtaatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaa 30860238  T
Q  303 tagacatgcaatatatataaattttaaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgccc 401  Q
    |||| ||||||||||||  || |||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30860237 tagatatgcaatatata--aagtttaaatttggtaggatcttatgatccgtgttacgatcccctgattcacaatctagtgacccctccccgatcttgccc 30860140  T
Q  402 aggatctcgactctgactaccttggtttctaccatctaattaaaaatgaaaacaaacatggcatgtgttatatataaaccatttttgtaaggtcttctaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30860139 aggatctcgactctgactaccttggtttctaccatctaattaaaaatgaaaacaaacatggcatgtgttatatataaaccatttttgtaaggtcttctaa 30860040  T
Q  502 ataattgattatgtcataagataaactccatttaactcttccaaacaccttctaaggcaagaaaatgtcaaaattctcttaagtcta 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  30860039 ataattgattatgtcataagataaactccatttaactcttccaaacaccttctacgacaagaaaatgtccaaattctcttaagtcta 30859953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30860594 - 30860499
Alignment:
Q  1 atgaagaagataataaaatggaggaa-tgatgatcccttgagtaattatgacctactccaacatgaagtgtttgggaattgagagaattataatta 95  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30860594 atgaagaagataataaaatggaggaaatgatgatcccctgagtaattatgacctactccaacatgaagtgtttgggaattgagagaattataatta 30860499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 30861599 - 30861680
Alignment:
Q  15 aaaatggaggaa-tgatgatcccttgagtaattatgacctactccaacatgaagtgtttgggaattgagagaattataatta 95  Q
    |||||||||||| |||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  30861599 aaaatggaggaaatgatgatcccttaagtgattatgaccttctccaacatgaattgtttgggaattgagagaattatgatta 30861680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 25951123 - 25951016
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgat-ccccgatt 369  Q
    |||| ||||| |||||||||||||||||||||  | ||| ||||||||| |||||| ||||||| ||||||||||||||| |||||||||| ||||||||    
T  25951123 aattgtgttgcttcatatgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatctatgttacgatcccccgatt 25951024  T
Q  370 cacaatct 377  Q
    ||| ||||    
T  25951023 cacgatct 25951016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 8143505 - 8143606
Alignment:
Q  327 taaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||||| ||||||||||| |||||||||| |||||   |||| || |||| ||||||| ||||||||||| |  |||||| ||| |||||||||||||    
T  8143505 taaatttggtaggatcttacaatccatgttatgatcctatgatttacgatcttgtgacccttccccgatcttacataggatcccgattctgactaccttg 8143604  T
Q  426 gt 427  Q
    ||    
T  8143605 gt 8143606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 5320247 - 5320159
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatccccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 424  Q
    ||||||||||||||||||||||| |||||       ||||| || |||| |||||| ||| ||||||||||| |||||||||| | ||||||||||    
T  5320247 aatttgataggatcttacgatccgtgtta-------cgatttacgatcttgtgacctctctccgatcttgcctaggatctcgattttgactacctt 5320159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 277 - 420
Target Start/End: Original strand, 13342720 - 13342865
Alignment:
Q  277 tgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgatc-cccgattcacaa 374  Q
    ||||| ||||||||||||||||||||| || ||||||| ||||  ||||| |||||||| |||||||||||||||| |||||| ||| ||| |||||| |    
T  13342720 tgttgcttcatatgcatatgtatgaatcgatatgcaatgtataggaatttataaatttggtaggatcttacgatccgtgttacaatctcccaattcacga 13342819  T
Q  375 tctagtgacccctccccgatcttgcccaggatctcgactctgacta 420  Q
    ||||||||||||||||||||||| || | |||||||| ||||||||    
T  13342820 tctagtgacccctccccgatcttacctatgatctcgagtctgacta 13342865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 17177198 - 17177305
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgat-ccccgatt 369  Q
    |||| ||||| |||||||||||||||||||||  | ||  ||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  17177198 aattgtgttgcttcatatgcatatgtatgaatttatattgaatatatatgaatttttaaatttgataggatcttacgatccgtgttacgatcccccgatt 17177297  T
Q  370 cacaatct 377  Q
    ||| ||||    
T  17177298 cacgatct 17177305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 43861647 - 43861727
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatat-aaattttaaatttgataggatcttacgatcc 351  Q
    |||| ||||| |||||||||||||||||||||  | ||| ||||||||| || ||||||||||| ||||||||||||||||    
T  43861647 aattgtgttgcttcatatgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatcc 43861727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 42541479 - 42541360
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgatt 369  Q
    |||||||| | || ||||||||||||||||||  | ||||||||  ||| ||||| | |||||| |||||||||| || || |||| |||| ||||||||    
T  42541479 aattatgtagttttatatgcatatgtatgaatctatatgcaatacgtatgaatttctgaatttggtaggatcttaagacccgtgttgcgatcccccgatt 42541380  T
Q  370 cacaatctagtgacccctcc 389  Q
    ||  |||| |||||||||||    
T  42541379 catgatcttgtgacccctcc 42541360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 50430172 - 50430075
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatccc-cgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||| |||||||||||||||| |||||||||||| |||||||| |||| |||||||||| ||||||||||| | |||||||| | |||||||||||    
T  50430172 aatttggtaggatcttacgatccgtgttacgatccctcgattcacgatcttgtgacccctctccgatcttgcctaagatctcgattttgactaccttg 50430075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 49308933 - 49309035
Alignment:
Q  324 ttttaaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacc 422  Q
    |||| |||||| |||||| || |||||| |||||| |||||| ||||||| |||| |||||||||| ||||||||||| | |||||||||||||||||||    
T  49308933 ttttgaatttggtaggatattccgatccttgttacaatcccccgattcacgatcttgtgacccctctccgatcttgcctacgatctcgactctgactacc 49309032  T
Q  423 ttg 425  Q
    |||    
T  49309033 ttg 49309035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 31237742 - 31237836
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgatcccc 365  Q
    |||| ||||| |||||||||||||||||||||  | ||| ||||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||    
T  31237742 aattgtgttgcttcatatgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccgtgttatgatcccc 31237836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 37236275 - 37236184
Alignment:
Q  288 atgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    ||||||||||||||||  | ||| ||||||||| |||||| ||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  37236275 atgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 37236184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 377
Target Start/End: Original strand, 1850895 - 1851035
Alignment:
Q  238 aatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgat 336  Q
    ||||| ||||||||||  | ||||| ||||| | ||||||||||  ||||||| ||||||||||||  | ||| ||||||||| ||||| |||||||| |    
T  1850895 aatttgagtgttatttaaagttatttttctattaaattatgttgcgtcatatgaatatgtatgaatttatatgtaatatatatgaatttctaaatttggt 1850994  T
Q  337 aggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    |||||||||| |||| || |||||| ||||||||||| ||||    
T  1850995 aggatcttacaatccgtg-tacgatcccccgattcacgatct 1851035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 12870835 - 12870738
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgat-ccccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttggt 427  Q
    |||||| |||||||||||||||| ||||||||| |||||||| || |||| ||||  |||| ||||||||||| | |||||||| | ||||||| |||||    
T  12870835 aatttggtaggatcttacgatccgtgttacgatcccccgatttacgatcttgtga--cctctccgatcttgcctaagatctcgattttgactactttggt 12870738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 363
Target Start/End: Original strand, 52739942 - 52739981
Alignment:
Q  324 ttttaaatttgataggatcttacgatccatgttacgatcc 363  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  52739942 ttttaaatttggtaggatcttacgattcatgttacgatcc 52739981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 6232631 - 6232701
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatc-cccgattcacaatctagtgacccctccccgatcttg 398  Q
    |||||| ||| |||||||||||| |||||||||| || ||||||| |||| |||| ||||| |||||||||    
T  6232631 aatttggtagaatcttacgatccgtgttacgatctcctgattcacgatcttgtgaaccctctccgatcttg 6232701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 19747449 - 19747400
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||| ||||    
T  19747449 aatttggtaggatcttacgatccatgttaggatcccccgattcacgatct 19747400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 7704293 - 7704133
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaa-ttttaaatttgataggatcttacgatccatgttacgatcc-ccgatt 369  Q
    |||||||||| |||||||| |||| |||||||  | ||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  7704293 aattatgttgcttcatatgaatatctatgaatttatatgcaatatatatgaacttttaaatttggtaggatcttacgatccgtgttacgatcctccgatt 7704194  T
Q  370 cacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttggtttc 430  Q
    ||| ||||  ||   ||| ||||||||| |  |||||||||| | || ||||||| |||||    
T  7704193 cacgatctcatgggtcctacccgatcttacttaggatctcgagtttgtctaccttagtttc 7704133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 6046572 - 6046679
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaa-ttttaaatttgataggatcttacgatccatgttacga-tccccgatt 369  Q
    |||| ||||| |||||||||||||||||||||  | |||||||||||||||| ||||||||||| ||||||||||| |||| | |||||| ||||| |||    
T  6046572 aattgtgttgcttcatatgcatatgtatgaatttatatgcaatatatataaatttttaaatttggtaggatcttacaatccgtattacgattccccaatt 6046671  T
Q  370 cacaatct 377  Q
    ||| ||||    
T  6046672 cacgatct 6046679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 12113328 - 12113435
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgatt 369  Q
    |||||||||| ||||| ||  |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||    
T  12113328 aattatgttgcttcatgtgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgatt 12113427  T
Q  370 cacaatct 377  Q
    ||| ||||    
T  12113428 cacgatct 12113435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 35081572 - 35081618
Alignment:
Q  365 cgattcacaatctagtgacccctccccgatcttgcccaggatctcga 411  Q
    |||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  35081572 cgattcacgatcttgtgacccctctccgatcttgcctaggatctcga 35081618  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 8542063 - 8542164
Alignment:
Q  327 taaatttgataggatcttacgatccatgttacgatcc-ccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||||| ||||||||| ||||||||||||||||||  | |||||| ||   || ||||  ||||||||||| | |||||||||| | || ||||||||    
T  8542063 taaatttggtaggatcttccgatccatgttacgatcctgctattcacgatactgtcaccctgccccgatcttgtctaggatctcgattttgtctaccttg 8542162  T
Q  426 gt 427  Q
    ||    
T  8542163 gt 8542164  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 3793920 - 3794019
Alignment:
Q  327 taaatttgataggatcttacgatccatgttacgatc-cccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||| |||| ||||| ||||||||||||| || |||||||||| | || ||||||||    
T  3793920 taaatttggtaggatcttacgatccgtgttacgatctcccgattcacgatcttgtgactcctccccgatcttacctaggatctcgagtttgtctaccttg 3794019  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 5016856 - 5016922
Alignment:
Q  274 ttatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgatagg 339  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||    
T  5016856 ttatgttgcttcatatgcatatgtatgaatatacatgcaatatatttgaatttctaaatttgatagg 5016922  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 38966046 - 38966132
Alignment:
Q  293 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  38966046 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 38966132  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 15556954 - 15557025
Alignment:
Q  308 atgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  15556954 atgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 15557025  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 21662276 - 21662341
Alignment:
Q  287 tatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatcc 351  Q
    |||| ||||||||||||  | ||| ||||||||| |||||| ||||||| ||||||||||||||||    
T  21662276 tatgaatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatcc 21662341  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 7320625 - 7320736
Alignment:
Q  316 tatataaattt-taaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgact 413  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||   |||| ||||||| | ||||| ||||||||||| || |||||||||| |    
T  7320625 tatataaatttctaaatttggtaggatcttacgatccgtgttacgatcctatgatttacaatcttgcgacccttccccgatcttacctaggatctcgatt 7320724  T
Q  414 ctgactaccttg 425  Q
    ||||||||||||    
T  7320725 ctgactaccttg 7320736  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 24315893 - 24315807
Alignment:
Q  293 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||  ||||||||| ||||||||||| ||||    
T  24315893 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatctgtgttacgatcccccgattcacgatct 24315807  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 24358226 - 24358140
Alignment:
Q  293 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||  ||||||||| ||||||||||| ||||    
T  24358226 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatctgtgttacgatcccccgattcacgatct 24358140  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 3887869 - 3887762
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgatt 369  Q
    |||||||||| ||||||||  |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||    
T  3887869 aattatgttgcttcatatgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgatt 3887770  T
Q  370 cacaatct 377  Q
    ||| ||||    
T  3887769 cacgatct 3887762  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 372
Target Start/End: Complemental strand, 32414762 - 32414660
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgatcc-ccgatt 369  Q
    |||||||||| |||||||| |||| |||||||  | ||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||| ||||||    
T  32414762 aattatgttgcttcatatgaatatctatgaatttatatgcaatatatatgaatttttaaatttggtaggatcttacgatccgtgttacgatcctccgatt 32414663  T
Q  370 cac 372  Q
    |||    
T  32414662 cac 32414660  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 5577275 - 5577179
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatccc-cgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 424  Q
    |||||| |||||||||||||||| |||||||||||  ||||| || |||| |||| ||||| ||||||||||| |||||||||| | ||||||||||    
T  5577275 aatttggtaggatcttacgatccgtgttacgatccatcgatttacgatcttgtgatccctctccgatcttgcctaggatctcgattttgactacctt 5577179  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 12582756 - 12582836
Alignment:
Q  272 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatcc 351  Q
    |||||||||| |||||||| ||||||||||||  | ||||||| ||||  ||||| |||||||| ||||||||||||||||    
T  12582756 aattatgttgcttcatatgaatatgtatgaatttatatgcaatttatacgaatttctaaatttggtaggatcttacgatcc 12582836  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 28662391 - 28662502
Alignment:
Q  316 tatataaattt-taaatttgataggatcttacgatccatgttacgatccc-cgattcacaatctagtgacccctccccgatcttgcccaggatctcgact 413  Q
    ||||||||||| |||||||| ||||||||||| |||  |||| ||||||  ||||| |  |||| ||||||| ||||||||||| || ||||||  || |    
T  28662391 tatataaatttctaaatttggtaggatcttacaatctgtgttgcgatcctacgatttatgatcttgtgacccttccccgatcttacctaggatccagatt 28662490  T
Q  414 ctgactaccttg 425  Q
    ||||||||||||    
T  28662491 ctgactaccttg 28662502  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 426
Target Start/End: Original strand, 32416589 - 32416692
Alignment:
Q  324 ttttaaatttgataggatcttacgatccatgttacgatcc-ccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacc 422  Q
    ||||||||||| ||||||||||||| || ||||||||||| ||||||||| ||||  ||   ||| ||||||||| |  |||||||||| | || |||||    
T  32416589 ttttaaatttggtaggatcttacgaaccgtgttacgatcctccgattcacgatctcatgggtcctacccgatcttacttaggatctcgagtttgtctacc 32416688  T
Q  423 ttgg 426  Q
    ||||    
T  32416689 ttgg 32416692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 47981749 - 47981808
Alignment:
Q  293 tatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatcc 351  Q
    |||||||||||  | ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  47981749 tatgtatgaatttatatgcaatatatatgaatttttaaatttggtaggatcttacgatcc 47981808  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 37741519 - 37741420
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatc-cccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttggt 427  Q
    |||||| ||||||||| |||||| |||||||||| ||||||| || |||| |||||| ||| ||||||||||| |||||||||| | |||||||||||||    
T  37741519 aatttggtaggatcttgcgatccgtgttacgatctcccgatttacgatcttgtgacctctctccgatcttgcctaggatctcgattttgactaccttggt 37741420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 21979892 - 21979997
Alignment:
Q  274 ttatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattca 371  Q
    |||||||| ||||||||  |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| | ||||||| ||||||||||    
T  21979892 ttatgttgcttcatatgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtattacgatcccccgattca 21979991  T
Q  372 caatct 377  Q
    | ||||    
T  21979992 cgatct 21979997  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 13956561 - 13956475
Alignment:
Q  293 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 377  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  13956561 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 13956475  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 35846512 - 35846415
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||| || ||||||||||||  ||||||||||||| ||||||| |||| |||| ||||| ||||||||||| | |||||||| | |||||||||||    
T  35846512 aatttggtaagatcttacgatctgtgttacgatcccccgattcacgatcttgtgaaccctctccgatcttgcctaagatctcgattttgactaccttg 35846415  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 422
Target Start/End: Original strand, 36497876 - 36497992
Alignment:
Q  308 atgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatctagtgacccctccccgatcttgcccagga 405  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||  ||   ||| ||||||||| |  ||||    
T  36497876 atgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctacccgatcttacttagga 36497975  T
Q  406 tctcgactctgactacc 422  Q
    |||||| |||| |||||    
T  36497976 tctcgagtctgtctacc 36497992  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Complemental strand, 41274593 - 41274533
Alignment:
Q  365 cgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||||| |||| |||||||||| ||||||||||| |||||||||| | |||||||||||    
T  41274593 cgattcacgatcttgtgacccctctccgatcttgcctaggatctcgattttgactaccttg 41274533  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 33509948 - 33509994
Alignment:
Q  316 tatataaattt-taaatttgataggatcttacgatccatgttacgat 361  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||    
T  33509948 tatataaatttctaaatttggtaggttcttacgatccatgttacgat 33509994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 47042 - 47139
Alignment:
Q  329 aatttgataggatcttacgatccatgttacgatcc-ccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactaccttg 425  Q
    |||||| |||||||||||||||| ||||||||||| |||||| || |||| || ||| ||| ||||||||||| |||||||||| | |||||||||||    
T  47042 aatttggtaggatcttacgatccgtgttacgatcctccgatttacgatcttgtaacctctctccgatcttgcctaggatctcgattttgactaccttg 47139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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