View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11638_low_2 (Length: 488)
Name: NF11638_low_2
Description: NF11638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11638_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 31762561 - 31762242
Alignment:
| Q |
18 |
gctacatttccattctatataaatcatccctctatagctagatactcacaaaaacaaaatctttactcaaattaaagtctcatatacacaagcatagagt |
117 |
Q |
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| T |
31762561 |
gctacatttccattctatataaatcatccctctatagctagatactcacaaaaacaaaatctttgctcaaattatagtctcatatacacaagcatagagt |
31762462 |
T |
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| Q |
118 |
aaaatggattctcgtatccaattcgtgctttttgtggtcacttttgcaacaattttgagccctaccattgcaaaactgactccaaattattatgacagaa |
217 |
Q |
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| T |
31762461 |
aaaatggattctcgtatccaattcgtgctatttgtggtcacttttgcaacaattttgagccctaccattgcaaaactgactccaaattattatgacagaa |
31762362 |
T |
|
| Q |
218 |
tttgtcctaaggcattgccaatcataaaatcaattgttaagcaagcaattattcgtgagccacgcatgggagcatcattgctacgtttgcatttccatga |
317 |
Q |
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| T |
31762361 |
tttgtcccaaggcattgccaatcataaattcaattgttaagcaagcaattattcgtgagccacgcatgggagcatcattgctacgtttgcatttccatga |
31762262 |
T |
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| Q |
318 |
ctgctttgtaaatgtaagtt |
337 |
Q |
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| T |
31762261 |
ctgctttgttaacgtaagtt |
31762242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 31768874 - 31768558
Alignment:
| Q |
29 |
attctatataaatcatccctctatagctagatactcacaaaaacaaaatctttactcaaattaaagtctcatatacacaagcatagagtaaaatggattc |
128 |
Q |
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| T |
31768874 |
attctatataaatcatccctctatagctagatactcacaaaaac---atcttagctcaaatcaaagtctaat----acaagcatatag-caaatggattc |
31768783 |
T |
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| Q |
129 |
tcgtatccaattcgtgctttttgtggtcacttttgcaacaattttgagccctaccattgcaaaactgactccaaattattatgacagaatttgtcctaag |
228 |
Q |
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| T |
31768782 |
tcgtttccaattcgtgctttttgtggtcacttttgcaacaattttgagtcctaccattgcaaagctgactccaaattattatgacagaatttgtcctaag |
31768683 |
T |
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| Q |
229 |
gcattgccaatcataaaatcaattgttaagcaagcaattattcgtgagccacgcatgggagcatcattgctacgtttgcatttccatgactgctttgtaa |
328 |
Q |
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| T |
31768682 |
gcattgccagtcataaagtcaattgttaagcaagcaattattcgtgagccacgcatgggagcatcattgctacgtttgcatttccatgactgctttgtta |
31768583 |
T |
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| Q |
329 |
atgtaagttagttgattacatttat |
353 |
Q |
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| T |
31768582 |
atgtaagttagttgattacatttat |
31768558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 326
Target Start/End: Complemental strand, 31754862 - 31754573
Alignment:
| Q |
33 |
tatataaatcatccctctatagctagatactcacaaaaacaaaatctttactcaaattaaagtctcatatacacaagcatagagtaaaatggattctcgt |
132 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||| |||||||| |
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| T |
31754862 |
tatataaaccacccctctatagctagatactcacaaaaacaaaatcttagctcaaatcaaagtctcata----caagcatatagtaaaatgaattctcgt |
31754767 |
T |
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| Q |
133 |
atccaattcgtgctttttgtggtcacttttgcaacaattttgagccctaccattgcaaaactgactccaaattattatgacagaatttgtcctaaggcat |
232 |
Q |
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| T |
31754766 |
atccaaattgtgttttttgtggtcacttttgcaacaattttgagtcctaccattgcaaaactgtcttctaattattatgacgaaatttgcccacaggcat |
31754667 |
T |
|
| Q |
233 |
tgccaatcataaaatcaattgttaagcaagcaattattcgtgagccacgcatgggagcatcattgctacgtttgcatttccatgactgctttgt |
326 |
Q |
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| T |
31754666 |
tgccaatcataaagtcggttgttaagcaagcaattattcgtgagccacgcatgggagcatcgttgctacgtttgcatttccatgactgctttgt |
31754573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 350 - 488
Target Start/End: Complemental strand, 31762063 - 31761925
Alignment:
| Q |
350 |
ttattattcaaacaacgtatatnnnnnnntagaagttaaattgttgaaggaaaaataaaattagtttctaaaggaacataaattaattcattatttttgt |
449 |
Q |
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| T |
31762063 |
ttattattcaaacaacgtatatgaaaaaataaaagttaaattgttgaaggaaaaataaaattagtttctaaaggaacataaattaattcattatttttgt |
31761964 |
T |
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| Q |
450 |
agtagtataactatatatttgaacaaggcaatatctaat |
488 |
Q |
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| T |
31761963 |
agtagtataactatatatttgagcaaggcaatatctaat |
31761925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 332
Target Start/End: Complemental strand, 32451093 - 32451065
Alignment:
| Q |
304 |
ttgcatttccatgactgctttgtaaatgt |
332 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32451093 |
ttgcatttccatgactgctttgtaaatgt |
32451065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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