View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11638_low_3 (Length: 374)
Name: NF11638_low_3
Description: NF11638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11638_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 3645594 - 3645242
Alignment:
| Q |
1 |
tttctatcgagatagtaccagcaagagttgaaagcactccaatgccaccacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaa |
100 |
Q |
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| T |
3645594 |
tttctatcaagatagtaccagcaagagttgaaagcactccaatgccaccacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaa |
3645495 |
T |
|
| Q |
101 |
cttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaataataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaatnn |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645494 |
cttcaaagatgagtagactagtaaggtaacaacagtggcaccagcaataataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaataa |
3645395 |
T |
|
| Q |
201 |
nnnnntgaagggttttacttcaataaagccaaattcatagcacgaaggtattattttaagcgatttcaaacaactaaagacacatatataactacannnn |
300 |
Q |
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| T |
3645394 |
aaaaatgaagggttttacttcaataaagccaaattcatagcacgaaggtattattttaagcgatttcaaacaactaaagacac--atataactacatttt |
3645297 |
T |
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| Q |
301 |
nnnnatcttaaaattttgtccatatctcactatttatattgtaaatgacaagaat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3645296 |
ttttatcttaaaattttgtccatatctcactatttatattgtaaacgacaagaat |
3645242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 3636342 - 3636145
Alignment:
| Q |
1 |
tttctatcgagatagtaccagcaagagttgaaagcactccaatgccaccacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaa |
100 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
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| T |
3636342 |
tttctatcaagattgtaccagcaagagttgaaagcactccaatgccaccacagatattgattatcaccacaagtaataagaaaactgtgaaatttgtaaa |
3636243 |
T |
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| Q |
101 |
cttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaataataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaat |
198 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
3636242 |
cttcaaagatgagtagacaagtaaggtaactacagtggcaccagcaataataaaagacagattttgtgtcaccagccacaattgcaatacctgccaat |
3636145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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