View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11638_low_5 (Length: 346)
Name: NF11638_low_5
Description: NF11638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11638_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 15754326 - 15754639
Alignment:
| Q |
20 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15754326 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagttgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaa |
15754425 |
T |
|
| Q |
120 |
acccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattctttaactggtggatgtcttgcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15754426 |
acccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattcttcaactggtggatgtcttgcatt |
15754525 |
T |
|
| Q |
220 |
gtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatat |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15754526 |
gtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatat |
15754625 |
T |
|
| Q |
320 |
caatcatcacattc |
333 |
Q |
| |
|
|||||||||||||| |
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|
| T |
15754626 |
caatcatcacattc |
15754639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 15765010 - 15765323
Alignment:
| Q |
20 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
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| T |
15765010 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagttgtgttctatactgcactctacattttagcagtgggaacaggtggaaccaa |
15765109 |
T |
|
| Q |
120 |
acccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattctttaactggtggatgtcttgcatt |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| | |||| |
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| T |
15765110 |
acccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaaaagcacttaagctctcattcttcaattggtggatgtcctacatt |
15765209 |
T |
|
| Q |
220 |
gtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatat |
319 |
Q |
| |
|
||| | ||||||||||||||||| ||| || ||||||| | |||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
15765210 |
gtcatggggtcactatttgcatttacaattctagtgtatgtacaagataatgtgagttggactcttggttatgctcttccaacaattggccttgcaatat |
15765309 |
T |
|
| Q |
320 |
caatcatcacattc |
333 |
Q |
| |
|
|||||||||||||| |
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|
| T |
15765310 |
caatcatcacattc |
15765323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 15778675 - 15778988
Alignment:
| Q |
20 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaa |
119 |
Q |
| |
|
||||||||||||| ||||| || || |||||| |||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
15778675 |
atgaaatggatgtgacaaagtgtaaagaagctaccacactacagctagttgtgttctatgttgccctctacattatagcagtgggaacaggtggaaccaa |
15778774 |
T |
|
| Q |
120 |
acccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattctttaactggtggatgtcttgcatt |
219 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||| ||||||||||| ||| | || |||||||||||||||||| || ||||||||||| |||||| |
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|
| T |
15778775 |
acctaacatttccaccattggtgctgaccagtttgatgattttgacccaaaacagaagggacttaagctctcattcttcaattggtggatgtcctgcatt |
15778874 |
T |
|
| Q |
220 |
gtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatat |
319 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||| |
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|
| T |
15778875 |
gtttttgggtcactatttgcattcacagttatagtgtatatacaagataatgtgagttggactcttggttatgctcttcaaacaactggatttgcaatat |
15778974 |
T |
|
| Q |
320 |
caatcatcacattc |
333 |
Q |
| |
|
|||||||||||||| |
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|
| T |
15778975 |
caatcatcacattc |
15778988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 15728570 - 15728876
Alignment:
| Q |
20 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||||| ||||||||||||||||||| || || |
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|
| T |
15728570 |
atgaaatggatgtgacaaaatgcaaggaagcttctacattacagctagttgtgttctatggtgcactctacattctagcagtgggaacaggtggaacaaa |
15728669 |
T |
|
| Q |
120 |
acccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattctttaactggtggatgtcttgcatt |
219 |
Q |
| |
|
||| |||||||| || ||||||||||| || ||||| || |||||| | ||||| || || || ||||||||||| ||||||||||||| |||| |
|
|
| T |
15728670 |
acctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacacaaactctcattcttcaactggtggatgttcagcatc |
15728769 |
T |
|
| Q |
220 |
gtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatat |
319 |
Q |
| |
|
|| |||| | || |||||| ||||| |||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
15728770 |
ttcattggaaccctttttgcaaattcagttttagtctacatacaagataatgttggttggactcttgggtatgcacttccaactcttggacttgcaatat |
15728869 |
T |
|
| Q |
320 |
caatcat |
326 |
Q |
| |
|
| ||||| |
|
|
| T |
15728870 |
ctatcat |
15728876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 15736344 - 15736656
Alignment:
| Q |
20 |
atgaaatggatgttacaaaatgcaaggaagcttccacacaaacactagctgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaa |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||| | ||||||||||||||||||| || || |
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|
| T |
15736344 |
atgaaatggatgtgacaaaatgcaaggaagcttccacactacagctagttgtgttctatggtgcactctacactctagcagtgggaacaggtggaacaaa |
15736443 |
T |
|
| Q |
120 |
acccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatcacttaagctctcattctttaactggtggatgtcttgcatt |
219 |
Q |
| |
|
| |||||||| || ||||||||||| || ||||| || |||||| | ||||| || || ||| ||||||||||| || |||||||||| |||| |
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|
| T |
15736444 |
ggctaacatttccactattggtgctgatcaatttgatgagtttgacacaaaagagaagaaacataaactctcattcttcaattggtggatgttcagcatc |
15736543 |
T |
|
| Q |
220 |
gtctttgggtcactatttgcattcacagttatagtgtacattcaagataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatat |
319 |
Q |
| |
|
||||||||| | || ||||| | || |||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||| |
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|
| T |
15736544 |
gtctttgggactcttcttgcaaattctgtcttagtctacatacaagataatgttggttggactcttggatatgcacttccaactcttggacttggaatat |
15736643 |
T |
|
| Q |
320 |
caatcatcacatt |
332 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
15736644 |
ctatcataacatt |
15736656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 65 - 326
Target Start/End: Complemental strand, 33413154 - 33412893
Alignment:
| Q |
65 |
tagctgtgttctatgttgcactctacattatagcagtgggaacaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttga |
164 |
Q |
| |
|
||||||||||||||| |||||| |||| | ||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||| | |
|
|
| T |
33413154 |
tagctgtgttctatggtgcactttacactctagcaataggaacaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttca |
33413055 |
T |
|
| Q |
165 |
ccctaaagaaaaatcacttaagctctcattctttaactggtggatgtcttgcattgtctttgggtcactatttgcattcacagttatagtgtacattcaa |
264 |
Q |
| |
|
|||||||||||||||| ||| || ||||| || || |||||||||| | |||| |||||||| | || ||||| || ||| |||| || || ||| |
|
|
| T |
33413054 |
tcctaaagaaaaatcacataaactttcatttttcaattggtggatgtttagcatcttctttgggaccctttttgctaatactgttctagtttatatccaa |
33412955 |
T |
|
| Q |
265 |
gataatgtgggttggactcttggttatgctcttccaactcttggacttgcaatatcaatcat |
326 |
Q |
| |
|
|||||||| |||||||||||||| |||||| | |||||||| ||| | |||||||||||||| |
|
|
| T |
33412954 |
gataatgttggttggactcttggatatgctttgccaactctaggattagcaatatcaatcat |
33412893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 39239872 - 39239799
Alignment:
| Q |
106 |
acaggtgggaccaaacccaacatttcaaccattggtgctgaccagtttgacgattttgaccctaaagaaaaatc |
179 |
Q |
| |
|
|||||||| ||||||||||||||||| || || || |||||||| ||||| || ||||| || ||||| ||||| |
|
|
| T |
39239872 |
acaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatgactttgatcccaaagagaaatc |
39239799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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