View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11638_low_6 (Length: 336)
Name: NF11638_low_6
Description: NF11638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11638_low_6 |
 | |
|
| [»] scaffold0187 (7 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 37866074 - 37866379
Alignment:
| Q |
14 |
acatcatagaatttcaaaacataaggtatcaacatgctataaccagcaatttttggagatttgtcttgtcttcattttcttaggattcagatcccnnnnn |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37866074 |
acatcatagaatttcaaaacataaggtatcaacatgctataaccagcaatttttggagatttgtcttgtcttcattttcttaggattcagatcccaaaaa |
37866173 |
T |
|
| Q |
114 |
nnnnnnnnnnnnnnnnntcagtgttatttt-tgttacataaatctgtgagtactcaatactactcaacactgatgccatactcttgtattacaaatcttg |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37866174 |
gaaagaaaaaaattaaatcagtgttattttttgttacataaatccgtgagtactcaatactactcaacactgatgccatactcttgtattacaaatcttg |
37866273 |
T |
|
| Q |
213 |
aaatggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37866274 |
aaatggaataacaaccatctatatttgtttaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttag |
37866373 |
T |
|
| Q |
313 |
ctttca |
318 |
Q |
| |
|
|||||| |
|
|
| T |
37866374 |
ctttca |
37866379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 37909411 - 37909514
Alignment:
| Q |
215 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
314 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37909411 |
atggaattgcaaccatctatatttgtataagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
37909510 |
T |
|
| Q |
315 |
ttca |
318 |
Q |
| |
|
|||| |
|
|
| T |
37909511 |
ttca |
37909514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 37909257 - 37909330
Alignment:
| Q |
14 |
acatcatagaatttcaaaacataaggtatcaacatgctata--accagcaatttttggagatttgtcttgtctt |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
37909257 |
acatcatagaatttcaaaacataaggtatccacgtactatatgaccagcaatttttggagttttgttttgtctt |
37909330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 37916584 - 37916674
Alignment:
| Q |
215 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
314 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| | ||||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37916584 |
atggaattacaaccatctatatttgtgaaagattctactttttc------------aaagaattcc-ttttgatggtttcataaccgattatttttagct |
37916670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 29666 - 29563
Alignment:
| Q |
215 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
314 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29666 |
atggaattgcaaccatctatatttgtataagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
29567 |
T |
|
| Q |
315 |
ttca |
318 |
Q |
| |
|
|||| |
|
|
| T |
29566 |
ttca |
29563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 310
Target Start/End: Complemental strand, 1257 - 1135
Alignment:
| Q |
187 |
gccatactcttgtattacaaatcttgaaatggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttg |
286 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||| ||||| |
|
|
| T |
1257 |
gccatactcttgtattacagattttgaaatggaataacaaccatctatatttgtgtaagattctactttttctcaagtaattttgaagagttcc-ttttg |
1159 |
T |
|
| Q |
287 |
atggtttcataaccgattgttttt |
310 |
Q |
| |
|
|||| |||| |||||||| ||||| |
|
|
| T |
1158 |
atgggttcacaaccgattattttt |
1135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 8425 - 8323
Alignment:
| Q |
215 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
314 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8425 |
atggaattgcaaccatctatatttgtataagattctactttttctgaaggaatcataaataattc-tttttgatggtttcataaccgattgtttttagct |
8327 |
T |
|
| Q |
315 |
ttca |
318 |
Q |
| |
|
|||| |
|
|
| T |
8326 |
ttca |
8323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 18753 - 18651
Alignment:
| Q |
215 |
atggaataacaaccatctatatttgtgtaagattctacttttcctcaaggaatcataaagagttcctttttgatggtttcataaccgattgtttttagct |
314 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18753 |
atggaattgcaaccatctatatttgtataagattctactttttctgaaggaatcataaataattcc-ttttgatggtttcataaccgattgtttttagct |
18655 |
T |
|
| Q |
315 |
ttca |
318 |
Q |
| |
|
|||| |
|
|
| T |
18654 |
ttca |
18651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 8582 - 8510
Alignment:
| Q |
14 |
acatcatagaatttcaaaacataaggtatcaacatgctataaccagcaatttttggagatttgtcttgtcttc |
86 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || | |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
8582 |
acatcatagaatctcaaaacataaggtatccacgtactataaccagtaatttttggagttttgtcttgtcttc |
8510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 18910 - 18838
Alignment:
| Q |
14 |
acatcatagaatttcaaaacataaggtatcaacatgctataaccagcaatttttggagatttgtcttgtcttc |
86 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || | |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
18910 |
acatcatagaatctcaaaacataaggtatccacgtactataaccagtaatttttggagttttgtcttgtcttc |
18838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 29820 - 29747
Alignment:
| Q |
14 |
acatcatagaatttcaaaacataaggtatcaacatgctata--accagcaatttttggagatttgtcttgtctt |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
29820 |
acatcatagaatttcaaaacataaggtatccacgtactatatgaccagcaatttttggagttttgttttgtctt |
29747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University