View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11638_low_7 (Length: 305)

Name: NF11638_low_7
Description: NF11638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11638_low_7
NF11638_low_7
[»] chr8 (2 HSPs)
chr8 (1-283)||(9440002-9440284)
chr8 (26-283)||(24594427-24594684)
[»] chr4 (4 HSPs)
chr4 (1-283)||(42270027-42270309)
chr4 (1-283)||(30946094-30946376)
chr4 (1-283)||(48697732-48698014)
chr4 (26-283)||(2003007-2003264)
[»] chr6 (5 HSPs)
chr6 (1-283)||(27874620-27874902)
chr6 (1-278)||(26976804-26977081)
chr6 (5-219)||(18967256-18967470)
chr6 (26-283)||(1472401-1472658)
chr6 (63-283)||(21965507-21965725)
[»] chr2 (3 HSPs)
chr2 (5-282)||(829604-829881)
chr2 (1-283)||(28715207-28715477)
chr2 (26-279)||(13840866-13841117)
[»] chr3 (4 HSPs)
chr3 (5-283)||(54545269-54545547)
chr3 (1-282)||(5819186-5819467)
chr3 (26-283)||(42589072-42589329)
chr3 (110-212)||(35975710-35975810)
[»] chr5 (3 HSPs)
chr5 (1-283)||(41722534-41722816)
chr5 (1-221)||(34359375-34359595)
chr5 (217-283)||(34356134-34356200)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-283)||(27946-28228)
[»] chr7 (4 HSPs)
chr7 (1-283)||(2324025-2324300)
chr7 (26-283)||(7504699-7504956)
chr7 (30-283)||(22510041-22510295)
chr7 (26-153)||(37957033-37957160)
[»] chr1 (2 HSPs)
chr1 (79-283)||(34973603-34973809)
chr1 (104-280)||(41413595-41413770)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 9440002 - 9440284
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9440002 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 9440101  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
9440102 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 9440201  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9440202 tatgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 9440284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 283
Target Start/End: Original strand, 24594427 - 24594684
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    |||| ||||||| |||| |||||||  ||||| |||||||||||  |||||||||  || || || |||||||| ||||||||||| || || |||| ||    
24594427 gatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctttct 24594526  T
126 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcaca 225  Q
    |||| ||||| ||||||||||| |||||||| ||||||||||| || || ||||||||  |||||||||||||||||||||| |||||||||||||||||    
24594527 ctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtcaca 24594626  T
226 atacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||  ||||||||  ||  |||| |||||||| |||||||  ||||| ||||||    
24594627 atacacaacaatttgttgttgactgtggccgagttcttccattagtctttgtatccaa 24594684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 42270309 - 42270027
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42270309 ctacgtttccaataggccatacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 42270210  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42270209 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 42270110  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42270109 tatgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 42270027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 30946094 - 30946376
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||| |||||||| |||||||||    
30946094 ctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatc 30946193  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30946194 ttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 30946293  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30946294 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 30946376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 48697732 - 48698014
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||| |||||||| |||||||||    
48697732 ctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatc 48697831  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48697832 ttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 48697931  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48697932 tatgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 48698014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 2003264 - 2003007
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    |||||||||||| |||| ||||||   ||||| |||||||||||  |||||||||  || || || |||||||| ||||||||||| || || |||| ||    
2003264 gatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctttct 2003165  T
126 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcaca 225  Q
    |||| ||||| ||||||||||| ||||||||  |||||||||| || || ||||||||   ||||||||||||||| ||||| ||||||| |||||||||    
2003164 ctaccacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagaatggattccttgcaatatgcaatgcactctaactgtcaca 2003065  T
226 atacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||  ||||||||  ||  ||||||||||||| |||||||  ||||| ||||||    
2003064 atacacaacaatttgttgttgactgtgcccgagttcttccattagtctttgtatccaa 2003007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 27874620 - 27874902
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27874620 ctacgtttccaataggccatacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 27874719  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
27874720 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 27874819  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27874820 tatgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 27874902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 26976804 - 26977081
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
26976804 ctacgtttccaataggccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatc 26976903  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    || ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
26976904 ttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacacctatgtgcttcgtccttgaatgaaaagctggattccttgcaa 26977003  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgca 278  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
26977004 tgtgcaaggcactctgactgtcacaatacacagtaattttctcctgcttgtgcccgagttcctccattaacctttgca 26977081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 18967470 - 18967256
Alignment:
5 gtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttct 104  Q
    |||| |||||||||||| || |||||||||||||||||||||||||  ||||| |  ||||||||  |||||||||| |||||||| |||||||||||||    
18967470 gttttcaataggccataggaggatcgacaccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttct 18967371  T
105 gcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtg 204  Q
    |||| ||||| ||||| ||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
18967370 gcatgtccacacttccctcctccactacttgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatgaaaagttggattccttgcaatgtg 18967271  T
205 caaggcactctgact 219  Q
     ||||||||||||||    
18967270 taaggcactctgact 18967256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 26 - 283
Target Start/End: Original strand, 1472401 - 1472658
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||  |||||||||  || || || |||||||| ||||||||||| || || | || ||    
1472401 gatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccttttct 1472500  T
126 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcaca 225  Q
    |||||||||| ||||||||||| ||||||||  |||||||||| || || ||||||||  ||||||| | |||||||||||| |||||||||||||||||    
1472501 ctactacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattacatgcaatgtgcaatgcactctgactgtcaca 1472600  T
226 atacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||  ||||||||  ||  ||||| ||||||| |||||||  ||||| ||||||    
1472601 atacacaacaatttgttgttgactgtgcacgagttcttccattagtctttgtatccaa 1472658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 63 - 283
Target Start/End: Complemental strand, 21965725 - 21965507
Alignment:
63 ttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctat 162  Q
    |||||||| ||||| ||||||||||||| ||||||   |||||||||||||| |||| |||||  |||||||| | |||||||| ||||||||||||| |    
21965725 ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcctgt 21965626  T
163 gtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcc 262  Q
    ||| | ||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||  ||||||||| ||||| ||| |||||| ||||  |||| |    
21965625 gtgctccgttcttgaatgaaaagttggattccttgaaatgtgcaaggtactctgactgt--caatacacaataattcgttgctgcttatgcctaagttgc 21965528  T
263 tccattaacctttgcatccaa 283  Q
    || ||||||||| ||||||||    
21965527 tcaattaaccttcgcatccaa 21965507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 282
Target Start/End: Complemental strand, 829881 - 829604
Alignment:
5 gtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttct 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
829881 gtttccaataggccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttct 829782  T
105 gcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtg 204  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
829781 acatatccacgcttccttcctctactacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtg 829682  T
205 caaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatcca 282  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
829681 caaggcactctgactgtcacaatacacagtaattttctcctgcttgtgcccgagttcctccattaacctttgcatcca 829604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 28715477 - 28715207
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||| ||| |||||||||||| || ||||||||| ||| |||||||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||    
28715477 ctacattttcaataggccatatgaggatcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatc 28715378  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    || ||||||| ||| | ||| ||||| || ||| | |||||||||||||||||||| |||||||| ||| |||||||| |||||| ||||||            
28715377 ttatgcatattcacac-tccctcctccac-actactcgaacaaaatgatattgaacacctatgtgcttcatccttgaacgaaaagttggatt-------- 28715288  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
      ||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
28715287 --tgcaaggcactataactatcacaatacacagtaatttgctcctgcttgtgcccgagtacctccattaacctttgcatccaa 28715207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 13840866 - 13841117
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    ||||||| ||||| |||||| | ||  |||||||  |||||||   |||| | |||||||||| | || ||||||||||||| |||||  |||||||| |    
13840866 gatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttccttcgt 13840965  T
126 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcaca 225  Q
    | |||||||   ||||||||||||||||||| | ||||||||| |||||||||||||||  || ||| ||||||||||| |||||| ||| | |||||||    
13840966 cgactactttt-gaacaaaatgatattgaacacttatgtgttttgtccttgaatgaaaaa-tgaatttcttgcaatgtgaaaggcattctaattgtcaca 13841063  T
226 atacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcat 279  Q
    ||||| ||||||||| |  || |||||||| |||||||||||||||||||||||    
13841064 atacatagtaatttgatgttgtttgtgcccaagttcctccattaacctttgcat 13841117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 54545547 - 54545269
Alignment:
5 gtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttct 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
54545547 gtttccaataggccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttct 54545448  T
105 gcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtg 204  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
54545447 gcatatccacgcttccttcctctactacttctcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagttgaattccttgcaatgtg 54545348  T
205 caaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
54545347 caatgcactctgactgtcacaatacacaataatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 54545269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 5819186 - 5819467
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||    
5819186 ctacgtttccaataggccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatc 5819285  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
5819286 ttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaa 5819385  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatcca 282  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
5819386 tgtgcaaggcactctgactgtcacaatacacagtaattttctcctgcttgtgcccgagttcctccattaacctttgcatcca 5819467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 42589329 - 42589072
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    |||| ||||||| |||| |||||||  ||||| |||||||||||   ||||||||  || || || |||||||| ||||||||||| || || |||| ||    
42589329 gatctacaccatgtaaatttgtcagcattgattgactttgtcataatatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctttct 42589230  T
126 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcaca 225  Q
    |||| ||||| ||||||||||| |||||||| ||||||||||| || || ||||||||  |||||||||||||||||||||| ||||| |||||||||||    
42589229 ctaccacttctcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactatgactgtcaca 42589130  T
226 atacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||  ||||||||  ||  ||||||||||||| |||||||  ||||| ||||||    
42589129 atacacaacaatttgttgttgactgtgcccgagttcttccattagtctttgtatccaa 42589072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 35975810 - 35975710
Alignment:
110 tccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaagg 209  Q
    ||||| |||| ||| | ||||||||  | ||||||||||||| ||||||||   | ||| |||||||||||||| | ||||||| |||||||||||||||    
35975810 tccacacttctttcatttactacttttcaaacaaaatgatatcgaacgcctgc-tattttgtccttgaatgaaacgttggattc-ttgcaatgtgcaagg 35975713  T
210 cac 212  Q
    |||    
35975712 cac 35975710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 41722816 - 41722534
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||| |||||||| |||||||||    
41722816 ctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatc 41722717  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41722716 ttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 41722617  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41722616 tatgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 41722534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34359595 - 34359375
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||| |||||||||    
34359595 ctacgtttccaataggccatacgaggatcgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatc 34359496  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    || ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
34359495 ttttgcatatccacgcttccctcctccactacttctcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctggattccttgcaa 34359396  T
201 tgtgcaaggcactctgactgt 221  Q
    |||| ||||||||||||||||    
34359395 tgtgtaaggcactctgactgt 34359375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 34356200 - 34356134
Alignment:
217 actgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
34356200 actgtcacaatacacagtaattttctcttgcttgtgcccgagttcctccattaacctttgcatccaa 34356134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 27946 - 28228
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||  ||||| |  ||||| ||  ||||| |||| |||||||| |||||||||    
27946 ctacgtttccaataggccataggaggatcgacaccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatc 28045  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    |||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28046 ttctgcatgtccacacttccctcctccactacttctcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 28145  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||| ||||    
28146 tgtgcaaggcactctgactgtcacaatacacagtaatttaatcctgcttgtgcacgagttcctccataaacctttgcaaccaa 28228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2324025 - 2324300
Alignment:
1 ctacgtttccaataggccatacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatc 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||  ||  ||||| | |||||||||  ||||||||||| ||||||| ||||| |||    
2324025 ctacgtttccaatagtccatacgatgatcgacaccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatc 2324124  T
101 ttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaa 200  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||| |||||| | ||||  || ||| |||||||||||| ||||||||||||||    
2324125 ttctgcatatccacacttccctcctttactacttctcgaacaaaatgata-tgaacgtcaatgttctttgtctttgaatgaaaagatggattccttgcaa 2324223  T
201 tgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    ||| ||       ||||||| ||||||||| ||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
2324224 tgtcca------cctgactgccacaatacaaagtgattttctcctgcttgtgcccgagttcctccattaacctttgcatccaa 2324300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 283
Target Start/End: Original strand, 7504699 - 7504956
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    |||||||||||| |||| |||||||| ||||| |||||||||||  |||||||||  || || || |||||||| || |||||||| || || |||| ||    
7504699 gatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacactccctttct 7504798  T
126 ctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcaca 225  Q
    |||| ||||| ||||||||||| ||||||||  |||||||||| || || ||||||||  |||||||||||||||||||||| |||||||||||||||||    
7504799 ctaccacttctcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtcaca 7504898  T
226 atacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    |||||||  ||||||||  ||  ||||| ||||||| |||||||  ||||| ||||||    
7504899 atacacaacaatttgttgttgactgtgcacgagttcttccattagtctttgtatccaa 7504956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 22510295 - 22510041
Alignment:
30 gacaccatataaacttgtcagtgttgatc-gactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcctcta 128  Q
    |||||||||||||||| ||| | |||||  |||||| ||||  |||||||| ||||||||| ||| ||||||||| ||||||||||   ||| ||||| |    
22510295 gacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctcctcca 22510196  T
129 ctacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaata 228  Q
    | |||     || |||||| |||||||||||| ||||  ||||| | ||||  |||| |||||| |||| |||||||||| |||||||||| ||||||||    
22510195 caactaatacaaaaaaatggtattgaacgcctttgtgcatcgtcttggaatacaaagttggattgcttgaaatgtgcaagacactctgactatcacaata 22510096  T
229 cacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatccaa 283  Q
    || |||||||||||  | ||||||| ||||||||||||||||||||  |||||||    
22510095 caaagtaatttgttgatacttgtgcgcgagttcctccattaaccttatcatccaa 22510041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 37957160 - 37957033
Alignment:
26 gatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttccttcct 125  Q
    |||||||| ||||||||||| |||   || || |||||||||||  ||  ||||||   ||| ||| |||||||||  ||||| ||||| ||||||||||    
37957160 gatcgacatcatataaacttatcaccattaattgactttgtcatcacacttgctagacaatctttattgtgaatctattgcatgtccacacttccttcct 37957061  T
126 ctactacttcgcgaacaaaatgatattg 153  Q
    |||||||||||| |||| ||||||||||    
37957060 ctactacttcgcaaacataatgatattg 37957033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 34973809 - 34973603
Alignment:
79 taggttatcattagtgtgaatcttctgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaa 178  Q
    ||||||||||||||||||||||||| |||||||||| ||||  || || |||||||| | || ||||||||||| || |||||| || ||||||||||||    
34973809 taggttatcattagtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaatgatattaaatgcctatttgcttcgtccttgaa 34973710  T
179 tg--aaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttg 276  Q
    ||  ||||| |||||| | | ||||||||||| |||| | ||| ||| |||||||| |||| | ||  |||||||| |  ||| ||||||||||||||||    
34973709 tgaaaaaagttggatttcatacaatgtgcaagacactttaactttcataatacacaataatgtcttgatgcttgtgtctaagtccctccattaacctttg 34973610  T
277 catccaa 283  Q
    |||||||    
34973609 catccaa 34973603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 104 - 280
Target Start/End: Original strand, 41413595 - 41413770
Alignment:
104 tgcatatccacgcttccttcctctactacttcgcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgt 203  Q
    |||||||||||  ||||||| || | ||||||  ||||||||||||||||||||||||  ||  | ||||||||||| || |||||||| ||||||||||    
41413595 tgcatatccacatttccttcatccattacttct-gaacaaaatgatattgaacgcctacatgccttgtccttgaatggaaggctggattacttgcaatgt 41413693  T
204 gcaaggcactctgactgtcacaatacacagtaatttgttcctgcttgtgcccgagttcctccattaacctttgcatc 280  Q
    ||||| |||||| ||| |||||||| ||| |||||||||  ||  ||||   ||||||||| |||||| ||||||||    
41413694 gcaagacactctaactatcacaatatacaataatttgttattgtctgtgtttgagttcctcaattaacatttgcatc 41413770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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