View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11639_high_10 (Length: 246)

Name: NF11639_high_10
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11639_high_10
NF11639_high_10
[»] chr2 (17 HSPs)
chr2 (72-237)||(41282855-41283019)
chr2 (83-237)||(41282649-41282803)
chr2 (118-239)||(1233749-1233871)
chr2 (28-71)||(11617153-11617196)
chr2 (28-71)||(45085386-45085429)
chr2 (23-71)||(7645210-7645258)
chr2 (28-71)||(6110187-6110230)
chr2 (24-71)||(9864702-9864749)
chr2 (16-71)||(19264229-19264284)
chr2 (28-67)||(25572178-25572217)
chr2 (28-71)||(35517252-35517295)
chr2 (28-67)||(40808708-40808747)
chr2 (17-71)||(28599125-28599179)
chr2 (72-133)||(33361052-33361111)
chr2 (17-71)||(35023027-35023081)
chr2 (30-71)||(12938371-12938412)
chr2 (23-67)||(6765916-6765960)
[»] scaffold0178 (2 HSPs)
scaffold0178 (72-234)||(18486-18646)
scaffold0178 (118-238)||(19103-19226)
[»] chr5 (8 HSPs)
chr5 (71-214)||(120077-120218)
chr5 (18-71)||(20644143-20644196)
chr5 (23-71)||(37562745-37562793)
chr5 (23-71)||(42273776-42273824)
chr5 (28-67)||(4463491-4463530)
chr5 (28-71)||(43589951-43589994)
chr5 (17-71)||(20039231-20039285)
chr5 (23-71)||(9957419-9957467)
[»] chr4 (15 HSPs)
chr4 (16-71)||(52535567-52535622)
chr4 (18-71)||(20716307-20716360)
chr4 (17-71)||(29203633-29203687)
chr4 (72-140)||(5469961-5470027)
chr4 (18-71)||(39078283-39078336)
chr4 (28-71)||(2229374-2229417)
chr4 (28-71)||(26916452-26916495)
chr4 (28-71)||(47868006-47868049)
chr4 (28-67)||(48793612-48793651)
chr4 (29-71)||(12002616-12002658)
chr4 (23-69)||(14332889-14332935)
chr4 (23-71)||(4058842-4058890)
chr4 (35-71)||(20281718-20281754)
chr4 (23-71)||(41414588-41414636)
chr4 (73-117)||(45620874-45620918)
[»] chr3 (21 HSPs)
chr3 (71-135)||(8922888-8922950)
chr3 (71-135)||(41325826-41325888)
chr3 (71-135)||(50107572-50107634)
chr3 (19-71)||(8703238-8703290)
chr3 (19-71)||(9055125-9055177)
chr3 (28-71)||(23910461-23910504)
chr3 (28-71)||(30189704-30189747)
chr3 (28-71)||(35963285-35963328)
chr3 (17-71)||(14752145-14752199)
chr3 (17-59)||(21214383-21214425)
chr3 (30-71)||(6075214-6075255)
chr3 (28-69)||(28875541-28875582)
chr3 (28-68)||(579093-579133)
chr3 (80-135)||(1772880-1772933)
chr3 (72-135)||(8923629-8923690)
chr3 (72-135)||(23514488-23514549)
chr3 (23-71)||(29235320-29235368)
chr3 (72-135)||(34329130-34329191)
chr3 (23-67)||(50650980-50651024)
chr3 (23-71)||(50730242-50730290)
chr3 (23-71)||(50782564-50782612)
[»] chr1 (12 HSPs)
chr1 (28-67)||(3076428-3076467)
chr1 (28-71)||(13136543-13136586)
chr1 (28-71)||(39555575-39555618)
chr1 (23-71)||(11241156-11241204)
chr1 (28-71)||(24190598-24190641)
chr1 (23-68)||(1034987-1035032)
chr1 (72-135)||(1764521-1764582)
chr1 (23-67)||(3875003-3875047)
chr1 (23-71)||(6786967-6787015)
chr1 (23-71)||(15959624-15959672)
chr1 (23-71)||(32623989-32624037)
chr1 (23-71)||(32742186-32742234)
[»] chr8 (10 HSPs)
chr8 (18-71)||(34890154-34890207)
chr8 (72-135)||(38443039-38443100)
chr8 (28-67)||(4046883-4046922)
chr8 (28-71)||(13143935-13143978)
chr8 (28-71)||(43216337-43216380)
chr8 (23-71)||(7858655-7858703)
chr8 (23-67)||(29920253-29920297)
chr8 (23-71)||(30575819-30575867)
chr8 (23-71)||(34158275-34158323)
chr8 (72-116)||(38443618-38443662)
[»] chr6 (5 HSPs)
chr6 (18-71)||(17751723-17751776)
chr6 (28-69)||(34177630-34177671)
chr6 (28-71)||(21542547-21542590)
chr6 (28-71)||(35129043-35129086)
chr6 (35-71)||(11082241-11082277)
[»] chr7 (10 HSPs)
chr7 (23-71)||(6191174-6191222)
chr7 (23-71)||(18102659-18102707)
chr7 (28-71)||(12632332-12632375)
chr7 (28-71)||(14805998-14806041)
chr7 (28-71)||(15252992-15253035)
chr7 (28-71)||(46760245-46760288)
chr7 (28-67)||(47779737-47779776)
chr7 (18-67)||(16917604-16917653)
chr7 (91-135)||(48204975-48205017)
chr7 (27-71)||(31549743-31549787)
[»] scaffold0045 (1 HSPs)
scaffold0045 (17-71)||(78086-78140)
[»] scaffold0442 (1 HSPs)
scaffold0442 (36-69)||(10176-10209)
[»] scaffold0300 (1 HSPs)
scaffold0300 (35-71)||(569-605)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 41283019 - 41282855
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 171  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  41283019 catctttactccatttaagtttgctcaatttacatcatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaacct 41282922  T
Q  172 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacg-ctgcctcctttcttcttcttct 237  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  41282921 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 41282649 - 41282803
Alignment:
Q  83 catttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaa-c 181  Q
    ||||||| ||||||| |||||||||||||||||||  || ||||||||| ||| |||||||||| |||||||| |||  ||||||| | ||||||||| |    
T  41282649 catttaagtttgctccatttacaccatttaccatc--atagatgtgtgatatgtggaataaattgaacaaaggattgagattaaaaacatagaaaaaaac 41282746  T
Q  182 aaacttgttactctcttgtatctgaaacaacac-gctgcctcctttcttcttcttct 237  Q
    || ||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||    
T  41282747 aatcttattactttcttgtatctgaaacaacacatttgcctcctgtcttcttcttct 41282803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 1233749 - 1233871
Alignment:
Q  118 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaacaaacttgttactctcttgtatctgaaacaacac-gc 216  Q
    |||||||||||||||| | || | |||| ||| ||| ||||   ||||||||||||||||||||||||| |||  ||||||||||| ||| ||||||  |    
T  1233749 tcatggatgtgtgacacgtggcaaaaataaaataaatggttaagattaaaaccttagaaaaaacaaactagttcttctcttgtatccgaagcaacacacc 1233848  T
Q  217 tgcctcctttcttcttcttctct 239  Q
     | ||||||||||||||||||||    
T  1233849 agtctcctttcttcttcttctct 1233871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 11617196 - 11617153
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  11617196 aaaatcacacttattaagaaaattaaaacataagaatttggagt 11617153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 45085429 - 45085386
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  45085429 aaaatcacacttattaagaaaattaaaacataagaatttggagt 45085386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 7645210 - 7645258
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  7645210 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 7645258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 6110187 - 6110230
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  6110187 aaaatcacacttattaagaaaactaaaacataagaatttggagt 6110230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 9864702 - 9864749
Alignment:
Q  24 aaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||||    
T  9864702 aaatcaaatcacacttattaagaaaactaaaacataagaatttggagt 9864749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 19264284 - 19264229
Alignment:
Q  16 caaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||| |||||| ||||||||||||||| |||| ||||||||||| ||||    
T  19264284 caaaaaaaaaagaaaatcacacttattaagaaaactaaaacataagaatttagagt 19264229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 25572217 - 25572178
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  25572217 aaaatcacacttattaagaaaactaaagcataagaatttg 25572178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 35517295 - 35517252
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  35517295 aaaatcacacttattaagaaaactaaaacataagaatttggagt 35517252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 40808708 - 40808747
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  40808708 aaaatcacacttattaagaaaactaaagcataagaatttg 40808747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 28599125 - 28599179
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| |||| |||||  ||||||||||||||| |||| ||||||||||||||||    
T  28599125 aaaaaaaaaaaaaaattacacttattaagaaaactaaaacataagaatttggagt 28599179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 33361052 - 33361111
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgaca 133  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||   ||||||||||||||||    
T  33361052 catctttgctccatttacctttgctcaatttataccatttacc--ttcatggatgtgtgaca 33361111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 35023081 - 35023027
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| ||||| || || ||||||||||||||| |||| ||||||||||||||||    
T  35023081 aaaaaaaaaatcaattcacacttattaagaaaactaaaacataagaatttggagt 35023027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 12938412 - 12938371
Alignment:
Q  30 aatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| ||||||||||||||| |||| ||||||||||||||||    
T  12938412 aatcacacttattaagaaaactaaaacataagaatttggagt 12938371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 6765916 - 6765960
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||||||    
T  6765916 aaaatcaaatcacacttattaagaaaattaaaacataaaaatttg 6765960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 18486 - 18646
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 171  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  18486 catctttactccatttaagtttgttcaatttacaccatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaacct 18583  T
Q  172 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgctgcctcctttcttcttct 234  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  18584 tagaaaaaacaaacttgttactctcttgtagctgaaacaacacgccgcctcctttcttcttct 18646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 19226 - 19103
Alignment:
Q  118 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaa--aaaacaaacttgttactctcttgtatctgaaacaacacg 215  Q
    |||||||||||||||||| | |||||||||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||||||||||||| |||||| ||     
T  19226 tcatggatgtgtgacatgtgtaataaattaaacaaagggctgagattaaaaacttagaaaaaaaacaatcttattactctcttgtatctaaaacaagaca 19127  T
Q  216 c-tgcctcctttcttcttcttctc 238  Q
    | |||||||| |||||||||||||    
T  19126 cttgcctcctgtcttcttcttctc 19103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 120077 - 120218
Alignment:
Q  71 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacc 170  Q
    |||||||| |||||||||  ||| |||||||||| ||||||  ||  | || |||| |||||||  |||| |||| ||| ||| |||||  ||||||||     
T  120077 tcatctttgctccatttagctttcctcaatttaccccattt--caagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaact 120174  T
Q  171 ttagaaaaaacaaacttgttactctcttgtatctgaaacaacac 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  120175 ttagaaaaaacaaacttgttcctctcttgtatctgaaacaacac 120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20644196 - 20644143
Alignment:
Q  18 aaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  20644196 aaaaaaaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 20644143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 37562745 - 37562793
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  37562745 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 37562793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 42273824 - 42273776
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  42273824 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 42273776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 4463530 - 4463491
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  4463530 aaaatcacacttattaagaaaactaaagcataagaatttg 4463491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 43589951 - 43589994
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  43589951 aaaatcacacttattaagaaaactaaaacataagaatttggagt 43589994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 20039285 - 20039231
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| |||| ||| || ||||||||||||||| |||| ||||||||||||||||    
T  20039285 aaaaaaaaaaaaaattcacacttattaagaaaactaaaacataagaatttggagt 20039231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 9957419 - 9957467
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||| ||||||||||||    
T  9957419 aaaaaaaaatcacacttattaagaaaactaaaacatgagaatttggagt 9957467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 52535567 - 52535622
Alignment:
Q  16 caaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  52535567 caaaaataaaataaaattacacttattaagaaaactaaagcataagaatttggagt 52535622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20716360 - 20716307
Alignment:
Q  18 aaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  20716360 aaaaaaaaataaaatcacacttattaagaaaactaaaacataagaatttggagt 20716307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 29203687 - 29203633
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  29203687 aaaaaaaaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 29203633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 5470027 - 5469961
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaa 140  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||  | |||||||||||||||| ||||    
T  5470027 catctttgctccatttaagtttgctcaatttatcccatttacca--ttatggatgtgtgacatgtggaa 5469961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 39078336 - 39078283
Alignment:
Q  18 aaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  39078336 aaaaaaaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 39078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2229417 - 2229374
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  2229417 aaaatcacacttattaagaaaactaaaacataagaatttggagt 2229374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 26916495 - 26916452
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  26916495 aaaatcacacttattaagaaaactaaaacataagaatttggagt 26916452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 47868049 - 47868006
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  47868049 aaaatcacacttattaagaaaactaaaacataagaatttggagt 47868006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 48793612 - 48793651
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  48793612 aaaatcacacttattaagaaaactaaagcataagaatttg 48793651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 12002616 - 12002658
Alignment:
Q  29 aaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||    
T  12002616 aaatcacacttattaagaaaactaaaacataagaatttggagt 12002658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 14332935 - 14332889
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttgga 69  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||||    
T  14332935 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttgga 14332889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 4058890 - 4058842
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||    
T  4058890 aaaaaaaaatcacatttattaagaaaactaaaacataagaatttggagt 4058842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 20281754 - 20281718
Alignment:
Q  35 cacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  20281754 cacttattaagaaaactaaaacataagaatttggagt 20281718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 41414588 - 41414636
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||| ||||||    
T  41414588 aaaaaaaaatcacacttattaagaaaactaaaacataagaatatggagt 41414636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 45620874 - 45620918
Alignment:
Q  73 atctttactccatttaaatttgctcaatttacaccatttaccatc 117  Q
    |||||| ||||||||||||||||||||||||   |||||||||||    
T  45620874 atctttgctccatttaaatttgctcaatttatctcatttaccatc 45620918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 8922888 - 8922950
Alignment:
Q  71 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  8922888 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 8922950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 41325826 - 41325888
Alignment:
Q  71 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  41325826 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 41325888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 50107572 - 50107634
Alignment:
Q  71 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||||||| ||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  50107572 tcatctttactacatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 50107634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 8703290 - 8703238
Alignment:
Q  19 aaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||||| |||||| |||||||||| |||| |||| ||||||||||||||||    
T  8703290 aaataaaaaaaaatcacacttattaaaaaaactaaaacataagaatttggagt 8703238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 9055177 - 9055125
Alignment:
Q  19 aaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||||| |||||| |||||||||| |||| |||| ||||||||||||||||    
T  9055177 aaataaaaaaaaatcacacttattaaaaaaactaaaacataagaatttggagt 9055125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 23910461 - 23910504
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||    
T  23910461 aaaatcacacttattaagaaaattaaaacataagaatttagagt 23910504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 30189747 - 30189704
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||    
T  30189747 aaaatcacacttattaaaaaaattaaaacataagaatttggagt 30189704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 35963328 - 35963285
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  35963328 aaaatcacacttattaagaaaactaaaacataagaatttggagt 35963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 14752145 - 14752199
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| |||| |||||| |||||||| |||||| |||| ||||||||||||||||    
T  14752145 aaaaaaaaaaaaaaatcacacttatttagaaaactaaaacataagaatttggagt 14752199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 21214425 - 21214383
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcata 59  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||    
T  21214425 aaaaaaaaaataaaatcacacttattaagaaaattaaaacata 21214383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 6075255 - 6075214
Alignment:
Q  30 aatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  6075255 aatcacacttattaagaaaactaaagtataagaatttggagt 6075214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 28875582 - 28875541
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttgga 69  Q
    |||||| || |||||||||||| |||||||||||||||||||    
T  28875582 aaaatcacatttattaagaaaactaaagcataagaatttgga 28875541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 579093 - 579133
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttgg 68  Q
    |||||| ||||||||||||||| |||| |||||||||||||    
T  579093 aaaatcacacttattaagaaaactaaaacataagaatttgg 579133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 1772880 - 1772933
Alignment:
Q  80 ctccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| |||||||||    
T  1772880 ctccatttaagtttgctcaatttaccccatttac--tatcatggatatgtgacatg 1772933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 8923690 - 8923629
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||| ||||||||   ||||||| |||||| ||||||||||  ||||||||||||||||||    
T  8923690 catctttgctccatttgggtttgctccatttaccccatttacca--tcatggatgtgtgacatg 8923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 23514549 - 23514488
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||| ||||||||   |||||||||||||| ||||||||  | ||||||||||||||||||    
T  23514549 catctttgctccatttgcctttgctcaatttaccccatttac--tatcatggatgtgtgacatg 23514488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 29235368 - 29235320
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||| ||||    
T  29235368 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttagagt 29235320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 34329191 - 34329130
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||| || ||||||  |||||||||||||| ||||||||  | ||||||||||||||||||    
T  34329191 catctttgcttcatttatttttgctcaatttactccatttac--tatcatggatgtgtgacatg 34329130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 50650980 - 50651024
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||    
T  50650980 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttg 50651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 50730290 - 50730242
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||    
T  50730290 aaaaaaaaatcacatttattaagaaaactaaaacataagaatttggagt 50730242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 50782564 - 50782612
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||    
T  50782564 aaaaaaaaatcacatttattaagaaaactaaaacataagaatttggagt 50782612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 3076467 - 3076428
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  3076467 aaaatcacacttattaagaaaattaaagcataagaatttg 3076428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 13136543 - 13136586
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  13136543 aaaatcacacttattaagaaaattaaaacataagaatttggagt 13136586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 39555575 - 39555618
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  39555575 aaaatcacacttattaagaaaattaaaacataagaatttggagt 39555618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 11241204 - 11241156
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| |||||||||| ||||||||| ||||||||||||||||    
T  11241204 aaaaaaaaatcacacttattaaaaaaattaaaacataagaatttggagt 11241156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 24190641 - 24190598
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  24190641 aaaatcacacttattaagaaaactaaaacataagaatttggagt 24190598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 1035032 - 1034987
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttgg 68  Q
    ||||| ||||| || ||||||||||||||||| |||||||||||||    
T  1035032 aaaatcaaatcacatttattaagaaaattaaaacataagaatttgg 1034987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 1764521 - 1764582
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||| |||||||||| |||||||||||||| | ||||| ||  |||||||||| |||||||    
T  1764521 catctttgctccatttaagtttgctcaatttaccctatttatca--tcatggatgtatgacatg 1764582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 3875003 - 3875047
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||    
T  3875003 aaaaaaaaatcacacttattaagaaaagtaaaacataagaatttg 3875047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 6787015 - 6786967
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||| ||||||||||||    
T  6787015 aaaaaaaaatcacacttattaagaaaactaaaacatgagaatttggagt 6786967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 15959624 - 15959672
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||    
T  15959624 aaaaaaaaatcacatttattaagaaaactaaaacataagaatttggagt 15959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 32623989 - 32624037
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||    
T  32623989 aaaaaaaaatcacaattattaagaaaactaaaacataagaatttggagt 32624037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 32742186 - 32742234
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| |||||||||| |||| |||||||||||||||| ||||    
T  32742186 aaaaaaaaatcacacttattaaaaaaactaaagcataagaattttgagt 32742234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 34890154 - 34890207
Alignment:
Q  18 aaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  34890154 aaaaaaaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 34890207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 38443039 - 38443100
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||| |||||||||| | ||||| |||||| ||||||||||  ||||||||||||||||||    
T  38443039 catctttgctccatttaagtctgctccatttaccccatttacca--tcatggatgtgtgacatg 38443100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 4046883 - 4046922
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  4046883 aaaatcacacttattaagaaaattaaagtataagaatttg 4046922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 13143935 - 13143978
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  13143935 aaaatcacacttattaagaaaactaaaacataagaatttggagt 13143978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 43216337 - 43216380
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  43216337 aaaatcacacttattaagaaaactaaaacataagaatttggagt 43216380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 7858703 - 7858655
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || |||||||||||| |||| ||||||||||||||||    
T  7858703 aaaaaaaaatcacatttattaagaaaactaaaacataagaatttggagt 7858655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 29920253 - 29920297
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    ||||| ||||| ||||||||||||||| |||| ||||||||||||    
T  29920253 aaaattaaatcacacttattaagaaaactaaaacataagaatttg 29920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 30575819 - 30575867
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||| ||||||||||    
T  30575819 aaaaaaaaatcacacttattaagaaaactaaaacataaaaatttggagt 30575867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 34158275 - 34158323
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| || ||||||||||||||||| ||||||||| ||||||    
T  34158275 aaaaaaaaatcacatttattaagaaaattaaaacataagaatctggagt 34158323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 38443662 - 38443618
Alignment:
Q  72 catctttactccatttaaatttgctcaatttacaccatttaccat 116  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  38443662 catctttgctccatttaagtttgctccatttaccccatttaccat 38443618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 17751723 - 17751776
Alignment:
Q  18 aaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| ||||| ||||| ||||||||||||||||||||  |||||||||||||||    
T  17751723 aaaaaaaaatcaaatcacacttattaagaaaattaaaatataagaatttggagt 17751776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 34177630 - 34177671
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttgga 69  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  34177630 aaaatcacacttattaagaaaattaaaacataagaatttgga 34177671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 21542590 - 21542547
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  21542590 aaaatcacacttattaagaaaactaaaacataagaatttggagt 21542547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 35129043 - 35129086
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  35129043 aaaatcacacttattaagaaaactaaaacataagaatttggagt 35129086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 11082241 - 11082277
Alignment:
Q  35 cacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  11082241 cacttattaagaaaactaaaacataagaatttggagt 11082277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 6191222 - 6191174
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  6191222 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 6191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 18102707 - 18102659
Alignment:
Q  23 aaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||||||||    
T  18102707 aaaaaaaaatcacacttattaagaaaactaaaacataagaatttggagt 18102659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 12632332 - 12632375
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| || ||||||||||||||||| ||||||||||||||||    
T  12632332 aaaatcacatttattaagaaaattaaaacataagaatttggagt 12632375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 14806041 - 14805998
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  14806041 aaaatcacacttattaagaaaactaaaacataagaatttggagt 14805998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 15253035 - 15252992
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  15253035 aaaatcacacttattaagaaaactaaaacataagaatttggagt 15252992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 46760245 - 46760288
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||    
T  46760245 aaaatcacacttattaagaaaactaaaacataagaatttggagt 46760288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 47779776 - 47779737
Alignment:
Q  28 aaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  47779776 aaaatcacacttattaagaaaactaaagcataagaatttg 47779737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 16917653 - 16917604
Alignment:
Q  18 aaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttg 67  Q
    |||| ||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  16917653 aaaaaaaactaaaatcacacttattaagaaaattaaaacataaaaatttg 16917604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 48205017 - 48204975
Alignment:
Q  91 tttgctcaatttacaccatttaccatctcatggatgtgtgacatg 135  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  48205017 tttgctccatttacaccatttacca--tcatggatgtgtgacatg 48204975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 31549743 - 31549787
Alignment:
Q  27 taaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||    
T  31549743 taaaatcgcacttattaagaaaactaaaacataaaaaattggagt 31549787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 78140 - 78086
Alignment:
Q  17 aaaaataaaataaaatcgcacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||| |||| |||||| ||||||||||||||| |||| ||||||||||| ||||    
T  78140 aaaaaaaaaaaaaaatcacacttattaagaaaactaaaacataagaatttagagt 78086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 10209 - 10176
Alignment:
Q  36 acttattaagaaaattaaagcataagaatttgga 69  Q
    ||||||||||||||||||| ||||||||||||||    
T  10209 acttattaagaaaattaaaacataagaatttgga 10176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 569 - 605
Alignment:
Q  35 cacttattaagaaaattaaagcataagaatttggagt 71  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  569 cacttattaagaaaactaaaacataagaatttggagt 605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University