View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11639_high_4 (Length: 548)
Name: NF11639_high_4
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11639_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 363617 - 363101
Alignment:
| Q |
18 |
cttttagatgaaatttcttttttgtttattggtgattgctgtaattcaggagggctccttggtggagcccgagaggaaggtggtgtcagtaaccttctcc |
117 |
Q |
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| T |
363617 |
cttttagatgaaatttgttttttgtttattggtgattgctgtcattcaggagggctccttggtggagcccgagaggaaggtggtgtcagtaaccttctcc |
363518 |
T |
|
| Q |
118 |
ctgtgactgacaaaggaatggcaccaaatgcttcgacaaagcggggattaggagtttacatgtccgcatgccaaacgggacagattacaggaaaaggtcg |
217 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
363517 |
ctgtcactgacaaaggaatgacaccaaatgcttcgacaaagcggggattaggagtttacatgtccgcatgccaaacgggacagattacatgaaaaggtcg |
363418 |
T |
|
| Q |
218 |
cattcgttacaagagttattcggtcagtggttgttatttcactgaaacgttgatttactgcatcaagtcttttgaaaacaacgagttttcttataagaac |
317 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
363417 |
cattcgttacaagagtcattcggtcagaggttgttatttcactgaaacgttgatttactgcatcaagtcttttgaaaacaacgagttttcttataagaat |
363318 |
T |
|
| Q |
318 |
gtatacgacaaggtgttagatacaatgttagctgataatatgaaccacttacctgggttgtatggctcgccagaacaaatcaagttaaaatttctaagtc |
417 |
Q |
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| T |
363317 |
gtatacgacaaggtgttagatacaatgttagctgataatatgaaccacttacctgggttgtatggctcgccagaataaatcaagttaaaatttctaagtc |
363218 |
T |
|
| Q |
418 |
tcgaccaggtaaaagtacaggagaatccaatgcctaagtctcatgatcatgatccccatcattaccgacggaattattccggatcatcttcctccatgtc |
517 |
Q |
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| T |
363217 |
tcgaccaggtaaaagtacaggagaattcaatgcctaagtctcatgatcatgatccccatcgttaccgtcggaattattccggatcatcttcctccatgtc |
363118 |
T |
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| Q |
518 |
tccaaatattgctgatg |
534 |
Q |
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| T |
363117 |
tccaaatattgctgatg |
363101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 35 - 487
Target Start/End: Original strand, 41023636 - 41024094
Alignment:
| Q |
35 |
ttttttgtttattggtgattgctgtaattcaggagggctccttggtggagcccgagaggaaggtggtgtcagtaaccttctccctgtgactgacaaagga |
134 |
Q |
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|||||||||||||||||||| || |||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||| | ||||||||| | |
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| T |
41023636 |
ttttttgtttattggtgatttctataattcaggagggcacctttgtggagcctaagaggcaggtggtgtcagtaaccttctccctatcactgacaaacaa |
41023735 |
T |
|
| Q |
135 |
atggcaccaaatgcttcgacaaagcggggattaggagtttacatgtccgcatgccaaacgggacagattacaggaaaaggtcgcattcgttacaagag-- |
232 |
Q |
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||| ||||||| ||||||| |||| || || || | |||||| ||||||| ||| |||| || |||||| || |||| || |||| |||| ||| |
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| T |
41023736 |
atgacaccaaaagcttcgaaaaagtggagaatatgtgtttacttgtccgcttgctaaacttgatagattatagaaaaatatcacatttattacgagaaga |
41023835 |
T |
|
| Q |
233 |
----ttattcggtcagtggttgttatttcactgaaacgttgatttactgcatcaagtcttttgaaaacaacgagttttcttataagaacgtatacgacaa |
328 |
Q |
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|| || ||| | |||| |||| ||||||||||||||||||| ||||||||||||| | |||||||| ||||| |||||||| ||||||||| |
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| T |
41023836 |
cggattcttgggtaactggtgcatattgcactgaaacgttgatttacatcatcaagtcttttaagaacaacgatttttcgtataagaatgtatacgactc |
41023935 |
T |
|
| Q |
329 |
ggtgttagatacaatgttagctgataatatgaaccacttacctgggttgtatggctcgccagaacaaatcaagttaaaatttctaagtctcgaccaggta |
428 |
Q |
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|| | || | ||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
41023936 |
agtatgtgaaaaaatgttagctgataagatgaacaacttacttgggttgtatggctcgccataacaaatcaagttaaaatttataagtctcgaccatgta |
41024035 |
T |
|
| Q |
429 |
aaagtacaggagaatccaatgcctaagtctcatgatcatgatccccatcattaccgacg |
487 |
Q |
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|||||| |||||||||||||| || ||||||||||||||| ||||| || ||||||||| |
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| T |
41024036 |
aaagtagaggagaatccaatgtctgagtctcatgatcatgttccccttcgttaccgacg |
41024094 |
T |
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