View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11639_high_5 (Length: 423)
Name: NF11639_high_5
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11639_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 25 - 423
Target Start/End: Complemental strand, 30947464 - 30947064
Alignment:
| Q |
25 |
gaagaaaaagagagactca--gagttagggttgagaagagagacaacaggagcaacaatgcttgaactgcaataggacgttcaatgctgccgcattcttg |
122 |
Q |
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| T |
30947464 |
gaagaaaaagagagacacatagagttagggttgagaagagagacaacaagagcaacaatgcttgaactgcaatcggacgttcaatgctgccgcattcttg |
30947365 |
T |
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| Q |
123 |
atgaaatctcagctaaattgccatgaatttagcatgaattgagaaaatatccttgatatttggaaccctaagacgaagattctgagacaaatgccattga |
222 |
Q |
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| T |
30947364 |
atgaaatctcagctaaattgccatgaatttagcatgaattgagaaaatatccttgatatttggaaccctaagatgaagattctgagacaaatgccattga |
30947265 |
T |
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| Q |
223 |
ttcgtgttgaatgatgaaattcgattggtgatgaagatgatcgagtgttgattgggaatgtcgaagggagagaacggaaatggcgagggagaacagagag |
322 |
Q |
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| T |
30947264 |
ttcgtgttgaatgatgaaatttgattggtgatgaagatgatcgagtgttgattgggaatgtcgaagggagagaacggaaatggcgagggagaacagagag |
30947165 |
T |
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| Q |
323 |
aacgaacgaaagtgaaagcgtggaaaattaaaagaataagaactaccggcactttgatatgtttcttacataacttcaaacttggaatttcatgtaacag |
422 |
Q |
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| T |
30947164 |
aacgaacgaaagtgaaagcgtggaaaatcaaaagaataagaactaccggcactttgatatgtttcttacataacttcaaacttggaatttcatgtaacag |
30947065 |
T |
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| Q |
423 |
c |
423 |
Q |
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| T |
30947064 |
c |
30947064 |
T |
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