View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11639_low_2 (Length: 603)
Name: NF11639_low_2
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11639_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 54 - 573
Target Start/End: Complemental strand, 12547147 - 12546628
Alignment:
| Q |
54 |
tgttacaaagcaaatggatcccaatatcacaaaaacaaagaagaccaagtcaaaggaagaaaacagccaaataatagtgaacaagaatgcaaatggtggg |
153 |
Q |
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| T |
12547147 |
tgttacaaagcaaatggatcccaatatcacaaaaacaaagaagaccaagtcaaaggaagaaaacatccaaataatagtgaacaagaatgcaaatggtggg |
12547048 |
T |
|
| Q |
154 |
ccagaaggaagaccaaagagagcaatcaaattgcccaacagactcatggactaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagc |
253 |
Q |
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| T |
12547047 |
ccagaaggaagaccaaagagagaaattaaattgcccaacagactcatggactaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagc |
12546948 |
T |
|
| Q |
254 |
tgtcacaagttgccactctctactgttagaaccttaaaagggataagaataaaagtatttagaatttatc-ttttattttcttgtattgtgatgaggaca |
352 |
Q |
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| T |
12546947 |
tgtcacaagttgtcactctctaccgttagaaccttaaaagggataagaataaaagtatttagaatttatctttttattttcttgtattgtgatgaggaca |
12546848 |
T |
|
| Q |
353 |
agtgtctctagatcctaactattaggaacaattgtattgctatcctgtctataagagcaggaaaagtgaatgaataaaggnnnnnnntcattatctcaat |
452 |
Q |
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| T |
12546847 |
agtgtctctagatcctaactattaggaacaattgtattgctatcctgtctataagagcaggaaaagtgaatgaat-aaggcagaaaatcattatctcaat |
12546749 |
T |
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| Q |
453 |
actctctctttctcacagacttttcctgacataaaagggaatttaattcttgtctttatttctatcaattggtgctctcgtttcttgaaatcatgcctcc |
552 |
Q |
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| T |
12546748 |
actctctcttcctcacagactttccctgacataaaagggaatttaattcttgcctttatttctatcaattggtgctctcgtttcttgaaatcatgcctcc |
12546649 |
T |
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| Q |
553 |
tagacaacaagtcccaccaga |
573 |
Q |
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| T |
12546648 |
tagacaacaagtcccaccaga |
12546628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 75 - 402
Target Start/End: Complemental strand, 12144257 - 12143929
Alignment:
| Q |
75 |
caatatcacaaaaacaaagaagaccaagtcaaaggaagaaaacagccaaataatagtgaacaagaatgcaaatggtgggccagaaggaagaccaaagaga |
174 |
Q |
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| T |
12144257 |
caatatcacaaaaacaaagaagaccaagtcaaaggaagaaaacatccaaataatagtgaacaagaatgcaaatggtgggccagaaggaagaccaaagaga |
12144158 |
T |
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| Q |
175 |
gcaatcaaattgcccaacagactcatggactaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagctgtcacaagttgccactctct |
274 |
Q |
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| T |
12144157 |
gaaattaaattgcccaacagactcatggactaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagctgtcacaagttgtcactctct |
12144058 |
T |
|
| Q |
275 |
actgttagaaccttaaaagggataagaataaaagtatttagaatttatc-ttttattttcttgtattgtgatgaggacaagtgtctctagatcctaacta |
373 |
Q |
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| T |
12144057 |
accgttagaaccttaaaagggataagaataaaagtatttagaatttatctttttattttcttgtattgtgatgaggacaagtgtctctagatcctaacta |
12143958 |
T |
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| Q |
374 |
ttaggaacaattgtattgctatcctgtct |
402 |
Q |
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| T |
12143957 |
ttaggaacaattgtattgctatcctgtct |
12143929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 279 - 493
Target Start/End: Complemental strand, 12143929 - 12143715
Alignment:
| Q |
279 |
ttagaaccttaaaagggataagaataaaagtatttagaatttatctttt-attttcttgtattgtgatgaggacaagtgtctctagatcctaactattag |
377 |
Q |
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| T |
12143929 |
ttagaaccttaaaagggataagaataaaagtatttagaatttatctttttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattag |
12143830 |
T |
|
| Q |
378 |
gaacaattgtattgctatcctgtctataagagcaggaaaagtgaatgaataaaggnnnnnnntcattatctcaatactctctctttctcacagacttttc |
477 |
Q |
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| T |
12143829 |
gaacaattgtattgctatcctgtctataagagcaggaaaagtgaatgaat-aaggcagaaaatcattatctcaatactctctcttcctcacagactttcc |
12143731 |
T |
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| Q |
478 |
ctgacataaaagggaa |
493 |
Q |
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| T |
12143730 |
ctgacataaaagggaa |
12143715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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