View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11639_low_6 (Length: 381)
Name: NF11639_low_6
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11639_low_6 |
 | |
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| [»] scaffold0106 (1 HSPs) |
| | |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 379
Target Start/End: Original strand, 20850944 - 20851308
Alignment:
| Q |
15 |
acatcatatattttacgcagacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttc |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
20850944 |
acatcatatcttttacgcagacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatctttgttggggattttaatgcggttc |
20851043 |
T |
|
| Q |
115 |
taggggctcatgagaagaggggcagacgtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatac |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20851044 |
taggggctcatgagaagaggggtcgacgtctgcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctgaatac |
20851143 |
T |
|
| Q |
215 |
aagtggtgtgcaatatacttggaacaacggccgcttagatacagattcagnnnnnnngcgtctcgatcgtgccatttgtaatgaagcttggctggattgt |
314 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20851144 |
aaacggtgtacaatatacttggaacaacggccgcttagatacagattcagtttttttgcgtctcgaccgtgccatttgtaatgaagcttggctggattgt |
20851243 |
T |
|
| Q |
315 |
tggggtggtacttcctgtacggccctactgagaacacaatctgaccaccaccctttgcttctcca |
379 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20851244 |
tggggtggcacttcctgtacggccctactgagaacacaatctgaccaccaccctttgctgctcca |
20851308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 26694131 - 26694343
Alignment:
| Q |
42 |
tgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagaggggcagac |
141 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| | ||||| ||||| ||||| |||||||||||||| || | || ||||||||||| ||||| | | |
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|
| T |
26694131 |
tgggctgatctaacaatgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtc |
26694230 |
T |
|
| Q |
142 |
gtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtgcaatatacttggaacaa |
241 |
Q |
| |
|
|||| |||| ||| | ||||||| || |||||| ||||||| ||||||||| | ||| | ||||| ||||||| ||| || |||| |||||||||||| |
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|
| T |
26694231 |
gtctccctccctctatttcttgtacggattttcttgcttggtccaatgccaatttattattacatctgaatacaaatggggtacaatttacttggaacaa |
26694330 |
T |
|
| Q |
242 |
cggccgcttagat |
254 |
Q |
| |
|
||| | |||||| |
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|
| T |
26694331 |
tggcaggttagat |
26694343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 26963863 - 26964075
Alignment:
| Q |
42 |
tgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagaggggcagac |
141 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| | ||||| ||||| ||||| |||||||||||||| || | || ||||||||||| ||||| | | |
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|
| T |
26963863 |
tgggctgatctaacaatgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtc |
26963962 |
T |
|
| Q |
142 |
gtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtgcaatatacttggaacaa |
241 |
Q |
| |
|
|||| |||| ||| | ||||||| || |||||| ||||||| ||||||||| | ||| | ||||| ||||||| ||| || |||| |||||||||||| |
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|
| T |
26963963 |
gtctccctccctctatttcttgtacggattttcttgcttggtccaatgccaatttattattacatctgaatacaaatggggtacaatttacttggaacaa |
26964062 |
T |
|
| Q |
242 |
cggccgcttagat |
254 |
Q |
| |
|
||| | |||||| |
|
|
| T |
26964063 |
tggcaggttagat |
26964075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 21735829 - 21735797
Alignment:
| Q |
80 |
tccttggatatttgttggggattttaatgcggt |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
21735829 |
tccttggttatttgttggggattttaatgcggt |
21735797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 22025247 - 22024883
Alignment:
| Q |
15 |
acatcatatattttacgcagacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttc |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
22025247 |
acatcatatattttacacagacaattatgggctgatctaactatgttgcaaaataattttatagctcattggatctttgttggggattttaatgcggttc |
22025148 |
T |
|
| Q |
115 |
taggggctcatgagaagaggggcagacgtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatac |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22025147 |
taggggctcatgagaagaggggtcgacgtctgcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctgaatac |
22025048 |
T |
|
| Q |
215 |
aagtggtgtgcaatatacttggaacaacggccgcttagatacagattcagnnnnnnngcgtctcgatcgtgccatttgtaatgaagcttggctggattgt |
314 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
22025047 |
aaaaggtgtacaatatacttggaacaacggccgcttagatacagattcagtttttttgcgtctcgaccgtgccatttgtaatgaagcttggctggattgt |
22024948 |
T |
|
| Q |
315 |
tggggtggtacttcctgtacggccctactgagaacacaatctgaccaccaccctttgcttctcca |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22024947 |
tggggtggtacttcctgtacggccctactgagaacacaatctgaccaccaccctttgctgctcca |
22024883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 32135068 - 32134992
Alignment:
| Q |
54 |
actatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaa |
130 |
Q |
| |
|
|||||| | |||||||||||| | ||||| ||||| ||||| ||||||| | ||| ||| |||||||||||||||| |
|
|
| T |
32135068 |
actatgcttcaaaataattttgtggctccatggatctttgtgcgggatttcattgccgttttaggggctcatgagaa |
32134992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 254
Target Start/End: Complemental strand, 22835256 - 22835044
Alignment:
| Q |
42 |
tgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagaggggcagac |
141 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| | ||||| ||||| ||||| |||||||||||||| || | || ||||||||||| ||||| | | |
|
|
| T |
22835256 |
tgggctgatctaacaatgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtc |
22835157 |
T |
|
| Q |
142 |
gtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtgcaatatacttggaacaa |
241 |
Q |
| |
|
|||| |||| ||| | ||||||| || |||||| ||||||| ||||||||| | ||| | ||||| ||||||| ||| || |||| |||||||||||| |
|
|
| T |
22835156 |
gtctccctccctctctttcttgtacggattttcttgcttggtccaatgccaatttattattacatctgaatacaaatggggtacaatttacttggaacaa |
22835057 |
T |
|
| Q |
242 |
cggccgcttagat |
254 |
Q |
| |
|
||| | |||||| |
|
|
| T |
22835056 |
tggcaggttagat |
22835044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 23277 - 23419
Alignment:
| Q |
96 |
ggggattttaatgcggttctaggggctcatgagaagaggggcagacgtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatc |
195 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || || || | |||||||||| ||| | ||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
23277 |
ggggattttaatgcggtgttaggtgctcatgaaaaaagaggtcgccgtcttcctccttctatttcttgcaccgactttcttacttggtctaatgctaatc |
23376 |
T |
|
| Q |
196 |
tgttacttcatctcaatacaagtggtgtgcaatatacttggaa |
238 |
Q |
| |
|
| || | ||| | ||||||| ||| ||||||| ||||||||| |
|
|
| T |
23377 |
tcttgcggcatttgaatacaaatggggtgcaatttacttggaa |
23419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 7908 - 7940
Alignment:
| Q |
80 |
tccttggatatttgttggggattttaatgcggt |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
7908 |
tccttggttatttgttggggattttaatgcggt |
7940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 13220368 - 13220428
Alignment:
| Q |
76 |
tagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagagggg |
136 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||| || |||| |||||||||||| |||| |
|
|
| T |
13220368 |
tagcaccttggatttttgtgggggactttaatgcgattttaggtgctcatgagaagtgggg |
13220428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 12686114 - 12686082
Alignment:
| Q |
273 |
cgtctcgatcgtgccatttgtaatgaagcttgg |
305 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
12686114 |
cgtctcgatcgtgctatttgtaatgaagcttgg |
12686082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 21491759 - 21491715
Alignment:
| Q |
80 |
tccttggatatttgttggggattttaatgcggttctaggggctca |
124 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| || |||||||| |
|
|
| T |
21491759 |
tccttggttgtttgttggggattttaatgcggtgctcggggctca |
21491715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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