View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11639_low_7 (Length: 370)

Name: NF11639_low_7
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11639_low_7
NF11639_low_7
[»] chr4 (1 HSPs)
chr4 (15-370)||(27723107-27723454)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 27723107 - 27723454
Alignment:
Q  15 aataaactcttcaaaacacgtcttttatacacacagtttctaattctaaatgagaattggtgaaactgannnnnnnnnnnnnnnnaatgcagtgtggagt 114  Q
    |||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||                |||||||||||||||    
T  27723107 aataaactcttcaaaacacgt-------acacgcagtttctaattctaaatgagaattggtgaaactgatttttcttttttttt-aatgcagtgtggagt 27723198  T
Q  115 tgggtccagaagacataccaaagaagagtgatgtagcacccgttcttcgtattctgagtcttggacattcattgcaggcctttgtaaacggagaatacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27723199 tgggtccagaagacataccaaagaagagtgatgtagcacccgttcttcgtattctgagtcttggacattcattgcaggcctttgtaaacggagaatacat 27723298  T
Q  215 cggtaagcatacaacacagaaatttgatttgtaaaaggaaaatgctcaatccaatgtacttaaattgatgtcttactaatcaagtaattataataatttt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27723299 cggtaagcatacaacacagaaatttgatttgtaaaaggaaaatgctcaatccaatgtacttaaattgatgtcttaataatcaagtaattataataatttt 27723398  T
Q  315 cttcatggttttaaggatccaaacatggtagccatgaagagaaaggttttgaattc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27723399 cttcatggttttaaggatccaaacatggtagccatgaagagaaaggttttgaattc 27723454  T

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