View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11639_low_8 (Length: 279)
Name: NF11639_low_8
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11639_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 31605597 - 31605322
Alignment:
| Q |
1 |
ttgaggaaaattttctggttggtggagtgtggtttggactatatagtataattaattttggacatttttctcaaggtatctttggaataatcatcaaaag |
100 |
Q |
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| T |
31605597 |
ttgaggaaaattttctggttggtggagtgtggtttggactatatagtataattaattttggacatttttctaaaggtatctttggaataatcatcaaaag |
31605498 |
T |
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| Q |
101 |
ttgtggtttcttgttgc-ggtggctggacattgtttgatgatgcaataagattcaattgaaaattct------------aacctgaattcaagattccta |
187 |
Q |
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| T |
31605497 |
ttgtggtttcttgttgcgggtggctggacattgtttgatgatgcaataagattcaattgaaaattctattattttgatgaacctgaattcaagattccta |
31605398 |
T |
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| Q |
188 |
gcccacttcatagaatttcagcttaagtcaattttggttttgtaacttgtgattgagacaagagttgtcaattcat |
263 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605397 |
gcccacctcatagaatttcagctaaagtcaattttggttttgtaacttgtgattgagacaagagttgtcaattcat |
31605322 |
T |
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