View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11639_low_9 (Length: 269)
Name: NF11639_low_9
Description: NF11639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11639_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 51856877 - 51857117
Alignment:
| Q |
19 |
aattgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaa |
118 |
Q |
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| T |
51856877 |
aattggaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacgcatcgttggatctagaaagcaataaaaagaa-ttgaaaggaaa |
51856975 |
T |
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| Q |
119 |
aaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttcaatcagaaggaaagataaatttggatatgaaattttt |
218 |
Q |
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| T |
51856976 |
aaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttcaatcagcaggaaagataaatttggatatgaaattttt |
51857075 |
T |
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| Q |
219 |
cttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
260 |
Q |
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| T |
51857076 |
cttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
51857117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 8945941 - 8946112
Alignment:
| Q |
50 |
aacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagat |
149 |
Q |
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| T |
8945941 |
aacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaatgaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagat |
8946040 |
T |
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| Q |
150 |
aaatgaagggttaccacttaccaatcaatttcaatcagaaggaaagataaatttggatatgaaatttttctt |
221 |
Q |
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| T |
8946041 |
aaatgaagggttaccacttagcaatcgatttcaatcagcaggaaagataaatttggatatgaaatttttctt |
8946112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 43263127 - 43263171
Alignment:
| Q |
19 |
aattgaaacttcaaaataacaacaaatggaaaacataataaagat |
63 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43263127 |
aattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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