View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11640_high_11 (Length: 371)

Name: NF11640_high_11
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11640_high_11
NF11640_high_11
[»] chr6 (10 HSPs)
chr6 (71-223)||(6266427-6266578)
chr6 (79-198)||(9961154-9961273)
chr6 (86-218)||(34576163-34576295)
chr6 (79-197)||(29396470-29396588)
chr6 (79-196)||(33029650-33029767)
chr6 (79-150)||(22996045-22996116)
chr6 (79-150)||(23792284-23792355)
chr6 (106-142)||(14113393-14113429)
chr6 (118-197)||(22957005-22957084)
chr6 (118-197)||(23831308-23831387)
[»] chr4 (6 HSPs)
chr4 (67-222)||(2933556-2933711)
chr4 (71-223)||(4734115-4734267)
chr4 (71-225)||(12842276-12842431)
chr4 (84-206)||(4641614-4641737)
chr4 (79-199)||(42989757-42989875)
chr4 (127-198)||(45283137-45283208)
[»] chr8 (7 HSPs)
chr8 (71-224)||(32826586-32826739)
chr8 (79-226)||(43899004-43899152)
chr8 (84-224)||(39823348-39823488)
chr8 (79-223)||(10335370-10335514)
chr8 (79-222)||(11796571-11796706)
chr8 (112-225)||(36019613-36019726)
chr8 (79-172)||(28321019-28321112)
[»] chr5 (4 HSPs)
chr5 (71-226)||(25561119-25561275)
chr5 (71-218)||(36193744-36193891)
chr5 (79-223)||(8317330-8317474)
chr5 (79-218)||(33699983-33700122)
[»] chr1 (7 HSPs)
chr1 (79-222)||(9245797-9245940)
chr1 (79-206)||(26028978-26029105)
chr1 (105-221)||(49775688-49775804)
chr1 (77-224)||(47030434-47030581)
chr1 (79-201)||(30057576-30057697)
chr1 (79-218)||(6797420-6797558)
chr1 (79-218)||(1141472-1141610)
[»] chr7 (7 HSPs)
chr7 (118-222)||(43202343-43202447)
chr7 (71-222)||(46205831-46205982)
chr7 (79-223)||(37961519-37961663)
chr7 (79-218)||(22609805-22609944)
chr7 (79-228)||(29772339-29772487)
chr7 (133-219)||(6728827-6728911)
chr7 (92-172)||(45900284-45900364)
[»] chr2 (3 HSPs)
chr2 (119-222)||(24441951-24442054)
chr2 (79-206)||(40611581-40611708)
chr2 (79-218)||(33425109-33425247)
[»] chr3 (6 HSPs)
chr3 (79-223)||(38360180-38360324)
chr3 (79-219)||(54383672-54383812)
chr3 (72-174)||(8913903-8914006)
chr3 (106-222)||(26813969-26814085)
chr3 (120-222)||(17071865-17071967)
chr3 (127-218)||(41410547-41410638)
[»] scaffold0227 (1 HSPs)
scaffold0227 (79-221)||(5051-5193)
[»] scaffold0063 (1 HSPs)
scaffold0063 (79-222)||(35769-35910)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 6266427 - 6266578
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  6266427 gagcaatgttatttgtacaactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacgcaaatcgaaatcactaaaaaaatattaaaaa 6266526  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6266527 atagcaaaatagttgttggttgt-caaaaatgatgtcaatatatcattcctct 6266578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 9961154 - 9961273
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||| |||||||||||  | |||||||| | | ||| |||||||| |||||| |||||||||| | | ||| |||||||||||||||||||    
T  9961154 ttatttgtacaactaaaattgaacaattaatgtaacaccatataacattgtgagaagcacgtaaatcgaaatcaatcaaaaaatattaaaaaatagcaaa 9961253  T
Q  179 atagttgttggttgtacaaa 198  Q
      ||||||||||||||||||    
T  9961254 taagttgttggttgtacaaa 9961273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 34576163 - 34576295
Alignment:
Q  86 tacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttg 185  Q
    ||||| |||||||||||| || ||| |||| | ||| ||| |||||| |||||||||||| |||| | |||||  |||||||||||| |||||| |||||    
T  34576163 tacaatcaaaattgaacaactaatgcaacaccttttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaaattgcaaaagagttg 34576262  T
Q  186 ttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    || ||||||  ||||||||||  ||||||||||    
T  34576263 ttagttgtatcaaaatgatgttcatatatcatt 34576295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 29396588 - 29396470
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||| | ||||||| ||| |  ||| ||||||||||||  |||||||||||||  |||||||||| | | |||  ||  | ||||||||||||    
T  29396588 ttatttgtacatctaaaattggacaaccaatgcaacaacctttaactttgtgaggagcacaaaaatcgaaatcaatcaaaatatcattaaaaatagcaaa 29396489  T
Q  179 atagttgttggttgtacaa 197  Q
      |||||||||||||||||    
T  29396488 taagttgttggttgtacaa 29396470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 33029767 - 33029650
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||||| |||||||||||||| ||| || | | |||| | | ||| ||||||| ||||| | |||||||||| | | ||| |||||||||| |||||| |    
T  33029767 ttatttatacaaccaaaattggacaactaacgcaacaccatataacattgtgatgagcatgtaaatcgaaatcaatcaaaaaatattaaaacatagcaga 33029668  T
Q  179 atagttgttggttgtaca 196  Q
      ||||||||||||||||    
T  33029667 taagttgttggttgtaca 33029650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 22996116 - 22996045
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat 150  Q
    ||||||||||| | ||||||| ||| |  ||||||||||||||||  |||||||||||||  ||||||||||    
T  22996116 ttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaat 22996045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 23792284 - 23792355
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat 150  Q
    ||||||||||| | ||||||| ||| |  ||||||||||||||||  |||||||||||||  ||||||||||    
T  23792284 ttatttgtacatctaaaattggacaaccaatgtaacaacctttaactttgtgaggagcacataaatcgaaat 23792355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 14113429 - 14113393
Alignment:
Q  106 ttatgtaacaacctttaatattgtgaggagcacgcaa 142  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  14113429 ttatgcaacaacctttgatattgtgaggagcacgcaa 14113393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 22957084 - 22957005
Alignment:
Q  118 ctttaatattgtgaggagcacgcaaatcgaaat-aactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaa 197  Q
    ||||||| |||||||||||||  |||||||||| || ||||| | |||| |||||||||||   |||||||||||||||||    
T  22957084 ctttaattttgtgaggagcacataaatcgaaatcaagtaaaatattatt-aaaaatagcaagtaagttgttggttgtacaa 22957005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 23831308 - 23831387
Alignment:
Q  118 ctttaatattgtgaggagcacgcaaatcgaaat-aactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaa 197  Q
    ||||||| |||||||||||||  |||||||||| || ||||| | |||| |||||||||||   |||||||||||||||||    
T  23831308 ctttaattttgtgaggagcacataaatcgaaatcaagtaaaatattatt-aaaaatagcaagtaagttgttggttgtacaa 23831387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 2933711 - 2933556
Alignment:
Q  67 tgtcgagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatatta 166  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||||  |||||||||||||||||| |||||||| |||| ||||||| |||||||    
T  2933711 tgtcgagcaatgttatttgtacaaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagcgcgcaaatcaaaatcactaaaaaaatatta 2933612  T
Q  167 aaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2933611 aaaaatagtaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctc 2933556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 4734115 - 4734267
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| ||||||||| || ||||||||||||  ||||| |||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  4734115 gagcaatgttatttgtataatcaaaattgaacaatttatgcaacaacttttaatattgtgaggagcacgccaatcaaaatcactaaaagaatattaaaaa 4734214  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4734215 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctct 4734267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 12842431 - 12842276
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaa-tattaaaa 169  Q
    ||||||| |||||||||||||||||||| |||| || ||  ||||||||||||||||||||||| || ||||||| |||| ||||||| || ||||||||    
T  12842431 gagcaatgttatttgtacaaccaaaattcaacaactaatacaacaacctttaatattgtgaggaacatgcaaatcaaaatcactaaaaaaaatattaaaa 12842332  T
Q  170 aatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctcttt 225  Q
    |||||||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  12842331 aatagcaaagaagttgttggttgtacaaaaatgatgttcatatatcattcctcttt 12842276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 4641614 - 4641737
Alignment:
Q  84 tgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaa-tattaaaaaatagcaaaatag 182  Q
    |||||||||||||||| | |  ||||| |||||||||| | |||||||| |||||||||||  |||| | ||||| || ||||||||||| |||||  ||    
T  4641614 tgtacaaccaaaattggataatttatgcaacaacctttgacattgtgagaagcacgcaaattaaaatcaataaaaaaagtattaaaaaattgcaaagaag 4641713  T
Q  183 ttgttggttgtacaaaaatgatgt 206  Q
    ||||||||||||||||||| ||||    
T  4641714 ttgttggttgtacaaaaattatgt 4641737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 42989757 - 42989875
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||||||| || ||| ||||  || ||||||||||| ||||| ||||||| |||  | || || |||||| ||||||||||||    
T  42989757 ttatttgtacaaccaaaattgaacaactaatgcaaca--ctataatattgtgaagagcaagcaaatcaaaagcagtacaaaaatatt-aaaaatagcaaa 42989853  T
Q  179 atagttgtt-ggttgtacaaaa 199  Q
      ||||||| ||||||||||||    
T  42989854 taagttgttaggttgtacaaaa 42989875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 45283137 - 45283208
Alignment:
Q  127 tgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaa 198  Q
    ||||||||| | |||||||||||| | ||||| ||||||||||||||| |||  ||||| ||||| ||||||    
T  45283137 tgtgaggagtatgcaaatcgaaatcaataaaaaaatattaaaaaatagaaaataagttgctggttttacaaa 45283208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 32826586 - 32826739
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| ||||||||||||| ||||||||||| |||| | ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  32826586 gagcaatgttatttgtacaactaaaattgaacaacttaggcaacaaactttaatattgtgaggaacacgcaaatcgaaatcactaaaagaatattaaaaa 32826685  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctctt 224  Q
    |||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32826686 ataataaaatagttgttggttttacaaaaatgatgtcaatatatcattcctctt 32826739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 43899152 - 43899004
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat-aactaaaagaatattaaaaaatagcaa 177  Q
    ||||||||||||||||||||||||| || ||| |||| ||||||||| ||| ||||||||||||||| |||| ||  |||| ||||||||||||||||||    
T  43899152 ttatttgtacaaccaaaattgaacaactaatgcaacaccctttaatactgtaaggagcacgcaaatcaaaatcaataaaaaaaatattaaaaaatagcaa 43899053  T
Q  178 aatagttgttggttgtacaaaaatgatgtcaatatatcattcctctttt 226  Q
    |  |||||||||||||||| |||| || |  ||||||||||||||||||    
T  43899052 agaagttgttggttgtacacaaataatattcatatatcattcctctttt 43899004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 224
Target Start/End: Complemental strand, 39823488 - 39823348
Alignment:
Q  84 tgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagt 183  Q
    |||||||||||||||||||| || ||| |||| ||||| ||| |||||| ||||||||||||||||| | |||||  | |||||||||| |||||| |||    
T  39823488 tgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaaattgcaaaagagt 39823389  T
Q  184 tgttggttgtacaaaaatgatgtcaatatatcattcctctt 224  Q
    |||||||||||  ||||||||||  |||||||||| |||||    
T  39823388 tgttggttgtatcaaaatgatgttcatatatcattactctt 39823348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 10335370 - 10335514
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| ||||  |||| ||| |||||| ||||||||||||||||| | |||||  | |||||||||| |||||    
T  10335370 ttatatgtacaaccaaaattgaacaactaatgcaacactctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaaattgcaaa 10335469  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    | ||||||||||||||  ||||||||||  |||||||||| ||||    
T  10335470 agagttgttggttgtatcaaaatgatgttcatatatcattactct 10335514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 11796706 - 11796571
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||| ||| |||||| ||||||     | | ||||||||||||||||||| |||| | |||||  ||||||||||   |||||    
T  11796706 ttatttgtacaaccaaaattgtacaacttatgcaacaac-----acaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaa---gcaaa 11796615  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    | ||||||||||||||||||||||||||  | ||||||||||||    
T  11796614 aaagttgttggttgtacaaaaatgatgttcaaatatcattcctc 11796571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 36019613 - 36019726
Alignment:
Q  112 aacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaata 211  Q
    |||| ||| |||||||||||||||||||||||||||||  | | ||| ||||||||||| |||||||  |||||||||||||||| ||| |||||  | |    
T  36019613 aacaccctataatattgtgaggagcacgcaaatcgaaagtagtcaaaaaatattaaaaagtagcaaataagttgttggttgtacacaaaagatgttcaca 36019712  T
Q  212 tatcattcctcttt 225  Q
    | ||||||||||||    
T  36019713 tgtcattcctcttt 36019726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 28321019 - 28321112
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaat 172  Q
    |||| |||||||  ||||||| ||| |||||| |||||||||| |  |||||||||||||||||||| |||| | ||||| | |||||||||||    
T  28321019 ttatatgtacaattaaaattggacaacttatgcaacaacctttgactttgtgaggagcacgcaaatcaaaatcaataaaaaagtattaaaaaat 28321112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 25561275 - 25561119
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaa-aa 169  Q
    ||||||| |||||||| |||| ||||||||| | |||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||| ||    
T  25561275 gagcaatgttatttgtgcaactaaaattgaataacttatgcaacaatctttaatatcgtgaggagcatgcaaatcgaaatcactaaaagaatattaaaaa 25561176  T
Q  170 aatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctctttt 226  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25561175 aatagcaaaatagttgttggttgtacaaaaataatgtcaatatatcattcctctttt 25561119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 36193891 - 36193744
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| |||| ||||||| |||||||||||| || ||| |||| | ||||||||||||| |||||||||||||||||| ||||||| ||||||| |||    
T  36193891 gagcaatgttatatgtacaatcaaaattgaacaactaatgcaacaccttttaatattgtgaagagcacgcaaatcgaaatcactaaaaaaatattataaa 36193792  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||    
T  36193791 atagcaaaaaggttgttggttgtacaaaaatgatgttcatatatcatt 36193744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 8317330 - 8317474
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||  | | |||||| ||||| |||| | | ||||||||||||||||||| |||| | |||||  ||||||||||||||||||    
T  8317330 ttatttgtacaaccaaaattataaaacttatgcaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagcaaa 8317429  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
    | ||||||||||||||||||||||||||  | |||||||||||||    
T  8317430 aaagttgttggttgtacaaaaatgatgttcaaatatcattcctct 8317474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 33699983 - 33700122
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| |||| ||||| ||| |||||| |||||||||||| |||| | |||||  |||||||||||| |||||    
T  33699983 ttatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaaattgcaaa 33700082  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    | ||||||||||||||| ||||||||||  ||||||||||    
T  33700083 agagttgttggttgtaccaaaatgatgttcatatatcatt 33700122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 9245797 - 9245940
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||||||||||| |||||||||||| |||||| |||||| ||||||||||||||| | ||||||||  |||| | |||||||||||||||||||||||||    
T  9245797 ttatttgtacaatcaaaattgaacaacttatgcaacaacttttaatattgtgaggtgtacgcaaataaaaatcattaaaagaatattaaaaaatagcaaa 9245896  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9245897 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 9245940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 26028978 - 26029105
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||| ||||||| ||| |||||  ||||| |||| | | ||||||||||||||||||| |||| | |||||  ||||||||||||| ||||    
T  26028978 ttatttgtacaactaaaattgtacaacttatacaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaataacaaa 26029077  T
Q  179 atagttgttggttgtacaaaaatgatgt 206  Q
    | |||||||| |||||||||||||||||    
T  26029078 aaagttgttgcttgtacaaaaatgatgt 26029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 49775804 - 49775688
Alignment:
Q  105 cttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgat 204  Q
    |||||| |||||||||| | | ||||| ||||||||||||| |||| | |||||  ||||||||||||| ||||| ||||||||||||||||||||||||    
T  49775804 cttatgcaacaacctttgacaatgtgaagagcacgcaaatcaaaatcaataaaaatatattaaaaaataacaaaaaagttgttggttgtacaaaaatgat 49775705  T
Q  205 gtcaatatatcattcct 221  Q
    ||  | |||||||||||    
T  49775704 gttcaaatatcattcct 49775688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 47030434 - 47030581
Alignment:
Q  77 ttttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagca 176  Q
    |||||| |||||||||||||||||||| || ||| ||||||| || ||| |||||| |||||| |||| ||||| | |||||  ||| ||||| || |||    
T  47030434 ttttatatgtacaaccaaaattgaacaactaatgcaacaaccattgataatgtgagaagcacgtaaattgaaatcattaaaaatatagtaaaatattgca 47030533  T
Q  177 aaatagttgttggttgtacaaaaatgatgtcaatatatcattcctctt 224  Q
    ||| |||| |||||||||| |||| |||||  |||||||||| |||||    
T  47030534 aaagagttattggttgtaccaaaacgatgttcatatatcattgctctt 47030581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 30057576 - 30057697
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||||||||||| ||  |||||| |||||| ||| | | |||||||| ||| |||||| |||| | || ||  ||||||||||||||||||    
T  30057576 ttatttgtacaaccaaaattgtac--cttatgcaacaacttttgacaatgtgaggaacactcaaatcaaaatcagtacaaatatattaaaaaatagcaaa 30057673  T
Q  179 ata-gttgttggttgtacaaaaat 201  Q
    | | ||||||||||||||||||||    
T  30057674 aaatgttgttggttgtacaaaaat 30057697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 6797558 - 6797420
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||| ||||||||||| || ||| |||| ||||||||| |||||| |||||||||||  |||| | |||||  ||||||||||||    ||    
T  6797558 ttatatgtacaactaaaattgaacaactaatgcaacaccctttaataatgtgagaagcacgcaaattaaaatcattaaaaatatattaaaaaat-tataa 6797460  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    | |||| |||||||||  ||||||||||  ||||||||||    
T  6797459 agagttattggttgtatcaaaatgatgttcatatatcatt 6797420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 1141610 - 1141472
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagca-cgcaaatcgaaataactaaaagaatattaaaaaatagcaa 177  Q
    |||| |||||||||||||||||| | || ||| |||| ||||||||| ||| || || | |||||||| |||| | ||||| | ||||||||| || |||    
T  1141610 ttatatgtacaaccaaaattgaataactaatgcaacaccctttaataatgtaagaagaaacgcaaatcaaaattattaaaata-tattaaaaatta-caa 1141513  T
Q  178 aatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    || ||||||||||| ||| ||||||||||  ||||||||||    
T  1141512 aagagttgttggttatactaaaatgatgttcatatatcatt 1141472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 43202447 - 43202343
Alignment:
Q  118 ctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcat 217  Q
    |||||||||||||| |||||||||||||||||| || |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43202447 ctttaatattgtgaagagcacgcaaatcgaaatcaccaaaaaagtattaaaaaatagcaaaataattgttggttgtacaaaaatgatgtcaatatatcat 43202348  T
Q  218 tcctc 222  Q
    |||||    
T  43202347 tcctc 43202343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 46205831 - 46205982
Alignment:
Q  71 gagcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaa 170  Q
    ||||||| |||| |||||||||||||||| ||| || ||| |||| | |||||||||||||||||||||  ||||||||| ||||||| ||||||| |||    
T  46205831 gagcaatgttatatgtacaaccaaaattggacaactaatgcaacaccttttaatattgtgaggagcacgtgaatcgaaatcactaaaaaaatattataaa 46205930  T
Q  171 atagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    |||| ||||  |||||||||||||||||||||||||   |||||||||||||    
T  46205931 atagtaaaaaggttgttggttgtacaaaaatgatgttcttatatcattcctc 46205982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 37961663 - 37961519
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||| |||  ||||| |||||||||| | ||||||||||||||||||||| |||| | ||||| | |||||||||||  ||||    
T  37961663 ttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaatcaaaatcagtaaaaaagtattaaaaaattacaaa 37961564  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
      | ||||||||||||||||||| ||||  ||||||| |||||||    
T  37961563 gaaattgttggttgtacaaaaattatgttcatatatcgttcctct 37961519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 22609944 - 22609805
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| |||| ||||| ||| |||||| |||||||||||| |||| | |||||  ||||| |||||| |||||    
T  22609944 ttatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatttaaaaattgcaaa 22609845  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    | |||||||| |||||  ||||||||||  ||||||||||    
T  22609844 agagttgttgattgtatcaaaatgatgttcatatatcatt 22609805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 29772487 - 29772339
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| ||||||| || ||||||||| |||||| |||||| ||| |||||||||||||||| |||||  || ||  ||||| |||||||||||||   |||    
T  29772487 ttatatgtacaatcagaattgaacaacttatgcaacaacttttgatattgtgaggagcacacaaattaaagtaggtaaaa-aatattaaaaaattataaa 29772389  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctcttttat 228  Q
      |||| ||||||||| |||||||||||  ||||||||||||||||||||    
T  29772388 gaagttattggttgtataaaaatgatgttcatatatcattcctcttttat 29772339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 6728827 - 6728911
Alignment:
Q  133 gagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattc 219  Q
    ||||||||||||| || ||| ||||| ||||||||||| ||| |||  ||||||||||||||||||||||||||  |||||||||||    
T  6728827 gagcacgcaaatcaaagtaagtaaaa-aatattaaaaa-tagtaaagaagttgttggttgtacaaaaatgatgttcatatatcattc 6728911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 45900284 - 45900364
Alignment:
Q  92 caaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaat 172  Q
    |||||||| ||| |||||  |||||||||||||||| ||||| | | ||||||| ||||   ||||| |||||||||||||    
T  45900284 caaaattggacaacttatacaacaacctttaatattatgaggtgtatgcaaatcaaaatcggtaaaacaatattaaaaaat 45900364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 24442054 - 24441951
Alignment:
Q  119 tttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||   |||||||||    
T  24442054 tttaatattgtgaggagcatgcaaatcgaaatcactaaaaaaatattataaaatagcaaaaaggttgttggttgtacaaaaatgatgttcttatatcatt 24441955  T
Q  219 cctc 222  Q
    ||||    
T  24441954 cctc 24441951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 40611708 - 40611581
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    ||||||||||||| | | ||| ||| |||||| |||||||||| | | ||||||||||||||||||| |||| | |||||  ||||||||||||||||||    
T  40611708 ttatttgtacaacgatatttgtacaacttatgcaacaacctttgacaatgtgaggagcacgcaaatcaaaatcaataaaaatatattaaaaaatagcaaa 40611609  T
Q  179 atagttgttggttgtacaaaaatgatgt 206  Q
    | ||||||||||||||||||||||||||    
T  40611608 aaagttgttggttgtacaaaaatgatgt 40611581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 33425109 - 33425247
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| ||||||  |||||||| ||| |||||| ||||| |||| |||||||||| |||||||||||| |||| | ||||| ||||||||||| | | |||    
T  33425109 ttatatgtacattcaaaattggacaacttatgcaacaatctttgatattgtgagaagcacgcaaatcaaaatcaataaaa-aatattaaaaatttgtaaa 33425207  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
      ||||||||||| ||||||||||||||  ||||||||||    
T  33425208 gaagttgttggttatacaaaaatgatgttcatatatcatt 33425247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 38360180 - 38360324
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||| |||  ||||| |||||||||| | ||||||||||||||||||||  |||| | ||||| | ||||||||||| |||||    
T  38360180 ttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaattaaaatcagtaaaaaagtattaaaaaattgcaaa 38360279  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctct 223  Q
      ||||||| ||||||||||||| ||||  |||||||||||||||    
T  38360280 gaagttgttcgttgtacaaaaattatgttcatatatcattcctct 38360324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 54383672 - 54383812
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||||||||||| || ||| |||| ||||| |||  ||||| |||||||||||| |||| | |||||  |||||||||||| |||||    
T  54383672 ttatatgtacaaccaaaattgaacaactaatgcaacatcctttgataacgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaaattgcaaa 54383771  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattc 219  Q
    | ||||||||| ||||| ||||||||||  |||||||||||    
T  54383772 agagttgttggctgtaccaaaatgatgttcatatatcattc 54383812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 8914006 - 8913903
Alignment:
Q  72 agcaattttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaat-aactaaaagaatattaaaaa 170  Q
    |||||| |||||||||||| |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||| ||  |||| |||||||||||    
T  8914006 agcaatgttatttgtacaatcaaaattgaacaactaatgcaacaacctttaatattgtgaggagcacacaaatcgaaatcaataaaaaaaatattaaaaa 8913907  T
Q  171 atag 174  Q
    ||||    
T  8913906 atag 8913903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 26813969 - 26814085
Alignment:
Q  106 ttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatg 205  Q
    ||||| |||||||||| | | |||||| |||||||||||| |||| | |||||  |||||||||||||| |||| |||||||||||||||||||||||||    
T  26813969 ttatgcaacaacctttgacaatgtgagaagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagtaaaaaagttgttggttgtacaaaaatgatg 26814068  T
Q  206 tcaatatatcattcctc 222  Q
    |  | ||||||||||||    
T  26814069 ttcaaatatcattcctc 26814085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 17071967 - 17071865
Alignment:
Q  120 ttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcattc 219  Q
    |||||||||||||||||||| ||||| |||| | ||||| ||||||||||||| | |||| |||||||| ||||| || ||| ||||  |||||||||||    
T  17071967 ttaatattgtgaggagcacgtaaatcaaaatgaataaaaaaatattaaaaaattgtaaaaaagttgttgattgtataagaataatgtttatatatcattc 17071868  T
Q  220 ctc 222  Q
    |||    
T  17071867 ctc 17071865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 41410547 - 41410638
Alignment:
Q  127 tgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaaatagttgttggttgtacaaaaatgatgtcaatatatcatt 218  Q
    |||||| |||||||||||| |||| | |||||  |||||||||||| |||||| ||||||| ||||||| |||||||| |  ||||||||||    
T  41410547 tgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaaattgcaaaagagttgttagttgtaccaaaatgatattcatatatcatt 41410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 5051 - 5193
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||| ||||||| |||  ||||| ||||| |||| ||||||| |||| |||||||||| |||| | ||||| | ||||||||||| |||||    
T  5051 ttatatgtacaactaaaattggacaatttatgcaacaatctttgatattgtaaggaacacgcaaatcaaaatcattaaaaaagtattaaaaaattgcaaa 5150  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcct 221  Q
      ||||||||||||||||||| | ||||  |||||||||||||    
T  5151 gaagttgttggttgtacaaaacttatgttcatatatcattcct 5193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 35769 - 35910
Alignment:
Q  79 ttatttgtacaaccaaaattgaacagcttatgtaacaacctttaatattgtgaggagcacgcaaatcgaaataactaaaagaatattaaaaaatagcaaa 178  Q
    |||| |||||||||||| ||||||| || ||||||||   ||| | |||||||||||||||||||||||||| | ||||| |||||||||||||  ||||    
T  35769 ttatatgtacaaccaaatttgaacaactaatgtaacattttttgacattgtgaggagcacgcaaatcgaaattattaaaa-aatattaaaaaat-ccaaa 35866  T
Q  179 atagttgttggttgtacaaaaatgatgtcaatatatcattcctc 222  Q
    | |||||||| |||||| ||||| || |  ||||||||||||||    
T  35867 agagttgttgattgtaccaaaataatattcatatatcattcctc 35910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University