View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_high_13 (Length: 357)
Name: NF11640_high_13
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 36745861 - 36746204
Alignment:
| Q |
14 |
tgagatgaattcgattaacgagttggtggaatcctgctcaataatcatatggcttgcatccgctttccacgcagctgtcaatttcggacaatatccttac |
113 |
Q |
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| T |
36745861 |
tgagatgaattcgattaacgagttggtggaatcctgctcaataatcatatggcttgcatccgctttccacgcagctgtcaatttcggacaatatccttac |
36745960 |
T |
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| Q |
114 |
ggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaagaatatgaagagatggagaaagatgaccaaagggctt |
213 |
Q |
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| T |
36745961 |
ggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaagaatatgaagagatggagaaagatgaccaaagggctt |
36746060 |
T |
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| Q |
214 |
atttgagaacaatcacaccaaagaccgaggctctcatcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagtttacttagggaaaag |
313 |
Q |
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| T |
36746061 |
atttgagaacaatcacaccaaagaccgaggctctcattgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagtttacttagggaaaag |
36746160 |
T |
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| Q |
314 |
agagaatgatgaatggacagcagatgaaaaggcaagagtagcct |
357 |
Q |
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| T |
36746161 |
agagaatgatgaatggacagcagatgaaaaggcaagagtagcct |
36746204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 302
Target Start/End: Original strand, 42689650 - 42689873
Alignment:
| Q |
79 |
tccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaaga |
178 |
Q |
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| T |
42689650 |
tccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttcctgaggaaggaactgcaca |
42689749 |
T |
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| Q |
179 |
atatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcatcgaccttacggtgatagagatattgtca |
278 |
Q |
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| T |
42689750 |
atatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccgaagtttcagactcttattgacctttcagtgatagaaatattgtca |
42689849 |
T |
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| Q |
279 |
aggcatgcttctgatgaagtttac |
302 |
Q |
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| T |
42689850 |
agacatgcttctgatgaagtttac |
42689873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 42692028 - 42691979
Alignment:
| Q |
249 |
atcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagt |
298 |
Q |
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| T |
42692028 |
atcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagt |
42691979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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