View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11640_high_15 (Length: 323)
Name: NF11640_high_15
Description: NF11640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11640_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 14191724 - 14191920
Alignment:
| Q |
55 |
catattttctttatttgtttatggtctcatatatatttatcttagaaatgaaagtcatgggagttnnnnnnnccttatgatagtcccttttctttaataa |
154 |
Q |
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| T |
14191724 |
catattttctttatttgtttatggtctcatatatatttatcttagaaatgaaagtcatgggagttaaaaaaaccttatgatagtcccttttctttaataa |
14191823 |
T |
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| Q |
155 |
gttaaatcagtccaaggaaattgatacgaaggtccttaattaggctgagatttgttgcctcactcgtagatctagtagcataataaaaatacacaat |
251 |
Q |
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| T |
14191824 |
gttaaatcagtccaaggaaattgatacgaaggtccttaattaggctgagatttgttgcctcactcgtagatctagtagcataaaaaaaatacacaat |
14191920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 320
Target Start/End: Complemental strand, 14192717 - 14192526
Alignment:
| Q |
130 |
tatgatagtcccttttcttt---aataagttaaatcagtccaaggaaattgatacgaaggtccttaattaggctgagatttgttgcctcactcgtagatc |
226 |
Q |
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| T |
14192717 |
tatgatagtccctttttttttttaagaagtcgaatcagtccatggaaattgattcgatggtccttaa----gctgagaattgttgcatccctcgtagatc |
14192622 |
T |
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| Q |
227 |
tagtagcataataaaaa--tacacaatttaataggagaaaaaacagtagatacaagaaatatatgatagaacaaaataagttacctttgcttctcc |
320 |
Q |
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| T |
14192621 |
tactagcagaaaaaaaaaatacacaatttaataggaggaaaaacaatagatccaagaaatatacgatagaacaaaatatgttaccttagcttctcc |
14192526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 14209680 - 14209769
Alignment:
| Q |
221 |
tagatctagtagcataataaaaatacacaatttaataggagaaaaaacagtagatacaagaaatatatgatagaacaaaataagttacctt |
311 |
Q |
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| T |
14209680 |
tagatctagtagcagaa-aaaaatacacaatttaataggagaaaaaacagtagatccaagaaacatatgatagaacaaaataagttacctt |
14209769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 17536034 - 17536115
Alignment:
| Q |
239 |
aaaaatacacaatttaataggagaaaaaacagtagatacaagaaatatatgatagaacaaaataagttacctttgcttctcc |
320 |
Q |
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| T |
17536034 |
aaaattacacaatttaataggagaaaaaataatagatctaagaaatatatgatagaacaaaataatttaccttagtttctcc |
17536115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 17531721 - 17531785
Alignment:
| Q |
239 |
aaaaatacacaatttaataggag-aaaaaacagtagatacaagaaatatatgatagaacaaaata |
302 |
Q |
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| T |
17531721 |
aaaattacacaatttaataggagaaaaaaataatagatctaagaaatatatgatagatcaaaata |
17531785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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